Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TDP1Q9NUW8 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TDP1Q9NUW8 AL035456.1-201ENST00000456064 1369 ntBASIC17.11■□□□□ 0.33
TDP1Q9NUW8 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TDP1Q9NUW8 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TDP1Q9NUW8 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TDP1Q9NUW8 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
TDP1Q9NUW8 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TDP1Q9NUW8 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
TDP1Q9NUW8 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.11■□□□□ 0.33
TDP1Q9NUW8 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TDP1Q9NUW8 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TDP1Q9NUW8 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
TDP1Q9NUW8 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
TDP1Q9NUW8 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.1■□□□□ 0.33
TDP1Q9NUW8 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TDP1Q9NUW8 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TDP1Q9NUW8 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC17.1■□□□□ 0.33
TDP1Q9NUW8 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TDP1Q9NUW8 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TDP1Q9NUW8 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TDP1Q9NUW8 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC17.1■□□□□ 0.33
TDP1Q9NUW8 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TDP1Q9NUW8 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TDP1Q9NUW8 AC015922.1-201ENST00000421102 1152 ntBASIC17.1■□□□□ 0.33
TDP1Q9NUW8 PNKD-204ENST00000436005 978 ntTSL 5 BASIC17.1■□□□□ 0.33
TDP1Q9NUW8 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC17.1■□□□□ 0.33
TDP1Q9NUW8 HLA-V-204ENST00000476601 1289 ntBASIC17.1■□□□□ 0.33
TDP1Q9NUW8 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TDP1Q9NUW8 SATB1-217ENST00000493952 626 ntTSL 3 BASIC17.1■□□□□ 0.33
TDP1Q9NUW8 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC17.1■□□□□ 0.33
TDP1Q9NUW8 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC17.1■□□□□ 0.33
TDP1Q9NUW8 LY6E-204ENST00000519546 971 ntTSL 2 BASIC17.1■□□□□ 0.33
TDP1Q9NUW8 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC17.1■□□□□ 0.33
TDP1Q9NUW8 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC17.1■□□□□ 0.33
TDP1Q9NUW8 AC239800.4-201ENST00000603712 296 ntBASIC17.1■□□□□ 0.33
TDP1Q9NUW8 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC17.1■□□□□ 0.33
TDP1Q9NUW8 AL138828.2-201ENST00000615812 383 ntBASIC17.1■□□□□ 0.33
TDP1Q9NUW8 SPDYE12P-201ENST00000618416 771 ntBASIC17.1■□□□□ 0.33
TDP1Q9NUW8 GPER1-207ENST00000619052 571 ntTSL 2 BASIC17.1■□□□□ 0.33
TDP1Q9NUW8 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
TDP1Q9NUW8 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
TDP1Q9NUW8 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TDP1Q9NUW8 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TDP1Q9NUW8 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TDP1Q9NUW8 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TDP1Q9NUW8 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TDP1Q9NUW8 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.1■□□□□ 0.33
TDP1Q9NUW8 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TDP1Q9NUW8 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TDP1Q9NUW8 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
TDP1Q9NUW8 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TDP1Q9NUW8 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
TDP1Q9NUW8 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 CFL1-212ENST00000531413 636 ntTSL 3 BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 AF228730.6-201ENST00000641497 218 ntBASIC17.09■□□□□ 0.33
TDP1Q9NUW8 AC084121.3-201ENST00000641716 218 ntBASIC17.09■□□□□ 0.33
TDP1Q9NUW8 AC105233.6-201ENST00000642093 218 ntBASIC17.09■□□□□ 0.33
TDP1Q9NUW8 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TDP1Q9NUW8 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.08■□□□□ 0.33
TDP1Q9NUW8 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TDP1Q9NUW8 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
TDP1Q9NUW8 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
TDP1Q9NUW8 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
TDP1Q9NUW8 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.08■□□□□ 0.33
TDP1Q9NUW8 GOLGA2P9-201ENST00000596977 1937 ntBASIC17.08■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms