Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC19.74■□□□□ 0.75
ZNF541Q9H0D2 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZNF541Q9H0D2 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZNF541Q9H0D2 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZNF541Q9H0D2 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZNF541Q9H0D2 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZNF541Q9H0D2 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.74■□□□□ 0.75
ZNF541Q9H0D2 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC19.74■□□□□ 0.75
ZNF541Q9H0D2 AC016396.2-201ENST00000562575 1417 ntBASIC19.74■□□□□ 0.75
ZNF541Q9H0D2 TUBB1P2-201ENST00000422712 1306 ntBASIC19.74■□□□□ 0.75
ZNF541Q9H0D2 TUBB1P1-201ENST00000503144 1300 ntBASIC19.74■□□□□ 0.75
ZNF541Q9H0D2 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
ZNF541Q9H0D2 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZNF541Q9H0D2 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZNF541Q9H0D2 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
ZNF541Q9H0D2 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC19.74■□□□□ 0.75
ZNF541Q9H0D2 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC19.74■□□□□ 0.75
ZNF541Q9H0D2 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
ZNF541Q9H0D2 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZNF541Q9H0D2 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZNF541Q9H0D2 NSL1-201ENST00000366976 722 ntTSL 2 BASIC19.74■□□□□ 0.75
ZNF541Q9H0D2 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZNF541Q9H0D2 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
ZNF541Q9H0D2 AC093724.1-201ENST00000448659 1027 ntBASIC19.74■□□□□ 0.75
ZNF541Q9H0D2 KLF2P4-201ENST00000451959 1225 ntBASIC19.74■□□□□ 0.75
ZNF541Q9H0D2 AC108725.1-201ENST00000495472 409 ntBASIC19.74■□□□□ 0.75
ZNF541Q9H0D2 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC19.74■□□□□ 0.75
ZNF541Q9H0D2 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC19.74■□□□□ 0.75
ZNF541Q9H0D2 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC19.74■□□□□ 0.75
ZNF541Q9H0D2 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
ZNF541Q9H0D2 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 TPR-209ENST00000613151 2478 ntTSL 5 BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 BRWD1P1-201ENST00000401091 371 ntBASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 RHOA-206ENST00000454011 889 ntTSL 2 BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 PIGL-212ENST00000581006 554 ntTSL 4 BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 AC024267.1-201ENST00000582320 895 ntBASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 AC026979.3-201ENST00000607315 403 ntBASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF541Q9H0D2 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ZNF541Q9H0D2 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ZNF541Q9H0D2 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ZNF541Q9H0D2 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ZNF541Q9H0D2 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
ZNF541Q9H0D2 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ZNF541Q9H0D2 AC006277.1-201ENST00000624348 1610 ntBASIC19.72■□□□□ 0.75
ZNF541Q9H0D2 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ZNF541Q9H0D2 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
ZNF541Q9H0D2 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC19.72■□□□□ 0.75
ZNF541Q9H0D2 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ZNF541Q9H0D2 AL589702.1-201ENST00000641229 1509 ntBASIC19.72■□□□□ 0.75
ZNF541Q9H0D2 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
ZNF541Q9H0D2 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.72■□□□□ 0.75
ZNF541Q9H0D2 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ZNF541Q9H0D2 BICD1-207ENST00000551848 1962 ntBASIC19.72■□□□□ 0.75
ZNF541Q9H0D2 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC19.72■□□□□ 0.75
ZNF541Q9H0D2 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC19.72■□□□□ 0.75
ZNF541Q9H0D2 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC19.72■□□□□ 0.75
ZNF541Q9H0D2 SLC25A47P1-201ENST00000531577 414 ntBASIC19.72■□□□□ 0.75
ZNF541Q9H0D2 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ZNF541Q9H0D2 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC19.72■□□□□ 0.75
ZNF541Q9H0D2 AC074044.1-201ENST00000609673 707 ntBASIC19.72■□□□□ 0.75
ZNF541Q9H0D2 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC19.72■□□□□ 0.75
ZNF541Q9H0D2 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC19.72■□□□□ 0.75
ZNF541Q9H0D2 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ZNF541Q9H0D2 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
ZNF541Q9H0D2 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms