Protein–RNA interactions for Protein: Q9BYV6

TRIM55, Tripartite motif-containing protein 55, humanhuman

Predictions only

Length 548 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55Q9BYV6 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.96■□□□□ 0.31
TRIM55Q9BYV6 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.96■□□□□ 0.31
TRIM55Q9BYV6 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM55Q9BYV6 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM55Q9BYV6 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM55Q9BYV6 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM55Q9BYV6 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.96■□□□□ 0.31
TRIM55Q9BYV6 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM55Q9BYV6 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM55Q9BYV6 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.96■□□□□ 0.31
TRIM55Q9BYV6 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM55Q9BYV6 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM55Q9BYV6 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC16.96■□□□□ 0.31
TRIM55Q9BYV6 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.96■□□□□ 0.31
TRIM55Q9BYV6 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC16.96■□□□□ 0.31
TRIM55Q9BYV6 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.96■□□□□ 0.31
TRIM55Q9BYV6 NME4-212ENST00000621774 904 ntTSL 3 BASIC16.96■□□□□ 0.31
TRIM55Q9BYV6 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM55Q9BYV6 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.96■□□□□ 0.31
TRIM55Q9BYV6 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM55Q9BYV6 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.96■□□□□ 0.31
TRIM55Q9BYV6 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.96■□□□□ 0.31
TRIM55Q9BYV6 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM55Q9BYV6 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM55Q9BYV6 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM55Q9BYV6 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
TRIM55Q9BYV6 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
TRIM55Q9BYV6 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.96■□□□□ 0.3
TRIM55Q9BYV6 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.96■□□□□ 0.3
TRIM55Q9BYV6 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC16.96■□□□□ 0.3
TRIM55Q9BYV6 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
TRIM55Q9BYV6 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.3
TRIM55Q9BYV6 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC16.96■□□□□ 0.3
TRIM55Q9BYV6 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
TRIM55Q9BYV6 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
TRIM55Q9BYV6 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 RNA5SP419-201ENST00000515908 135 ntBASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 IGHV3-52-201ENST00000519770 353 ntBASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 AP002490.2-201ENST00000524791 560 ntBASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 BNIP3P18-201ENST00000593976 575 ntBASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM55Q9BYV6 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM55Q9BYV6 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM55Q9BYV6 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.94■□□□□ 0.3
TRIM55Q9BYV6 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM55Q9BYV6 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM55Q9BYV6 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.94■□□□□ 0.3
TRIM55Q9BYV6 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC16.94■□□□□ 0.3
TRIM55Q9BYV6 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.94■□□□□ 0.3
TRIM55Q9BYV6 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.94■□□□□ 0.3
TRIM55Q9BYV6 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM55Q9BYV6 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM55Q9BYV6 COX5BP2-201ENST00000392354 334 ntBASIC16.94■□□□□ 0.3
TRIM55Q9BYV6 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM55Q9BYV6 DDT-203ENST00000403754 569 ntTSL 3 BASIC16.94■□□□□ 0.3
TRIM55Q9BYV6 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
TRIM55Q9BYV6 DDT-206ENST00000430101 573 ntTSL 2 BASIC16.94■□□□□ 0.3
TRIM55Q9BYV6 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.94■□□□□ 0.3
TRIM55Q9BYV6 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.94■□□□□ 0.3
TRIM55Q9BYV6 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
TRIM55Q9BYV6 AP001005.1-201ENST00000571755 1248 ntBASIC16.94■□□□□ 0.3
TRIM55Q9BYV6 AF228730.7-201ENST00000641842 219 ntBASIC16.94■□□□□ 0.3
TRIM55Q9BYV6 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM55Q9BYV6 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM55Q9BYV6 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM55Q9BYV6 AC068418.2-201ENST00000577309 3703 ntBASIC16.94■□□□□ 0.3
TRIM55Q9BYV6 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM55Q9BYV6 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM55Q9BYV6 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM55Q9BYV6 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM55Q9BYV6 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM55Q9BYV6 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms