Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 TSSC2-201ENST00000450217 709 ntBASIC14.65□□□□□ -0.06
NKX3-1Q99801 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
NKX3-1Q99801 DUX4L17-201ENST00000557360 1267 ntBASIC14.65□□□□□ -0.06
NKX3-1Q99801 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC14.65□□□□□ -0.06
NKX3-1Q99801 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC14.65□□□□□ -0.06
NKX3-1Q99801 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC14.65□□□□□ -0.06
NKX3-1Q99801 BNIP3P18-201ENST00000593976 575 ntBASIC14.65□□□□□ -0.06
NKX3-1Q99801 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
NKX3-1Q99801 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC14.65□□□□□ -0.06
NKX3-1Q99801 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC14.65□□□□□ -0.06
NKX3-1Q99801 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
NKX3-1Q99801 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
NKX3-1Q99801 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
NKX3-1Q99801 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC14.65□□□□□ -0.06
NKX3-1Q99801 HNRNPRP1-201ENST00000453465 1695 ntBASIC14.65□□□□□ -0.06
NKX3-1Q99801 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX3-1Q99801 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
NKX3-1Q99801 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX3-1Q99801 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC14.64□□□□□ -0.07
NKX3-1Q99801 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX3-1Q99801 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX3-1Q99801 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC14.64□□□□□ -0.07
NKX3-1Q99801 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
NKX3-1Q99801 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC14.64□□□□□ -0.07
NKX3-1Q99801 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX3-1Q99801 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC14.64□□□□□ -0.07
NKX3-1Q99801 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
NKX3-1Q99801 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX3-1Q99801 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC14.64□□□□□ -0.07
NKX3-1Q99801 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
NKX3-1Q99801 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX3-1Q99801 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC14.64□□□□□ -0.07
NKX3-1Q99801 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC14.64□□□□□ -0.07
NKX3-1Q99801 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
NKX3-1Q99801 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX3-1Q99801 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
NKX3-1Q99801 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX3-1Q99801 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC14.64□□□□□ -0.07
NKX3-1Q99801 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX3-1Q99801 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX3-1Q99801 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX3-1Q99801 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX3-1Q99801 PPIH-202ENST00000372549 327 ntTSL 3 BASIC14.64□□□□□ -0.07
NKX3-1Q99801 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX3-1Q99801 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC14.64□□□□□ -0.07
NKX3-1Q99801 AC246785.2-201ENST00000432512 513 ntBASIC14.64□□□□□ -0.07
NKX3-1Q99801 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC14.64□□□□□ -0.07
NKX3-1Q99801 AP002383.4-201ENST00000442518 975 ntBASIC14.64□□□□□ -0.07
NKX3-1Q99801 MINOS1P3-201ENST00000457048 203 ntBASIC14.64□□□□□ -0.07
NKX3-1Q99801 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC14.64□□□□□ -0.07
NKX3-1Q99801 TOB2P1-201ENST00000469761 992 ntBASIC14.64□□□□□ -0.07
NKX3-1Q99801 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
NKX3-1Q99801 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
NKX3-1Q99801 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX3-1Q99801 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
NKX3-1Q99801 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX3-1Q99801 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
NKX3-1Q99801 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC14.64□□□□□ -0.07
NKX3-1Q99801 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC14.64□□□□□ -0.07
NKX3-1Q99801 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX3-1Q99801 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX3-1Q99801 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC14.64□□□□□ -0.07
NKX3-1Q99801 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
NKX3-1Q99801 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
NKX3-1Q99801 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
NKX3-1Q99801 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX3-1Q99801 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX3-1Q99801 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
NKX3-1Q99801 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX3-1Q99801 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
NKX3-1Q99801 AC097637.2-201ENST00000624096 1997 ntBASIC14.64□□□□□ -0.07
NKX3-1Q99801 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
NKX3-1Q99801 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
NKX3-1Q99801 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
NKX3-1Q99801 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX3-1Q99801 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
NKX3-1Q99801 AC144831.1-201ENST00000573312 2656 ntBASIC14.63□□□□□ -0.07
NKX3-1Q99801 AL513477.1-201ENST00000602865 2407 ntBASIC14.63□□□□□ -0.07
NKX3-1Q99801 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX3-1Q99801 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
NKX3-1Q99801 INTS4P1-201ENST00000438455 1935 ntBASIC14.63□□□□□ -0.07
NKX3-1Q99801 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
NKX3-1Q99801 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX3-1Q99801 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC14.63□□□□□ -0.07
NKX3-1Q99801 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX3-1Q99801 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX3-1Q99801 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC14.63□□□□□ -0.07
NKX3-1Q99801 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX3-1Q99801 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX3-1Q99801 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX3-1Q99801 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX3-1Q99801 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX3-1Q99801 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC14.63□□□□□ -0.07
NKX3-1Q99801 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
NKX3-1Q99801 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC14.63□□□□□ -0.07
NKX3-1Q99801 LINC00265-3P-201ENST00000447588 903 ntBASIC14.63□□□□□ -0.07
NKX3-1Q99801 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC14.63□□□□□ -0.07
NKX3-1Q99801 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC14.63□□□□□ -0.07
NKX3-1Q99801 VENTXP7-201ENST00000475503 772 ntBASIC14.63□□□□□ -0.07
NKX3-1Q99801 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms