Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTDNEP1O95476 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CTDNEP1O95476 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CTDNEP1O95476 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTDNEP1O95476 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CTDNEP1O95476 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CTDNEP1O95476 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CTDNEP1O95476 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTDNEP1O95476 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC19.31■□□□□ 0.68
CTDNEP1O95476 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CTDNEP1O95476 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC19.31■□□□□ 0.68
CTDNEP1O95476 AL031432.2-201ENST00000566714 459 ntBASIC19.31■□□□□ 0.68
CTDNEP1O95476 AC018845.2-201ENST00000568326 409 ntBASIC19.31■□□□□ 0.68
CTDNEP1O95476 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC19.31■□□□□ 0.68
CTDNEP1O95476 AL928711.1-201ENST00000570165 459 ntBASIC19.31■□□□□ 0.68
CTDNEP1O95476 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
CTDNEP1O95476 AL031055.1-201ENST00000606362 631 ntBASIC19.31■□□□□ 0.68
CTDNEP1O95476 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC19.31■□□□□ 0.68
CTDNEP1O95476 AL645728.2-201ENST00000641974 660 ntBASIC19.31■□□□□ 0.68
CTDNEP1O95476 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTDNEP1O95476 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
CTDNEP1O95476 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
CTDNEP1O95476 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CTDNEP1O95476 BCL2-203ENST00000589955 5011 ntBASIC19.31■□□□□ 0.68
CTDNEP1O95476 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTDNEP1O95476 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTDNEP1O95476 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CTDNEP1O95476 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTDNEP1O95476 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC19.31■□□□□ 0.68
CTDNEP1O95476 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CTDNEP1O95476 REXO1L8P-201ENST00000604378 1897 ntBASIC19.31■□□□□ 0.68
CTDNEP1O95476 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC19.3■□□□□ 0.68
CTDNEP1O95476 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC19.3■□□□□ 0.68
CTDNEP1O95476 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC19.3■□□□□ 0.68
CTDNEP1O95476 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CTDNEP1O95476 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
CTDNEP1O95476 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
CTDNEP1O95476 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC19.3■□□□□ 0.68
CTDNEP1O95476 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTDNEP1O95476 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTDNEP1O95476 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CTDNEP1O95476 CRCP-205ENST00000431089 942 ntTSL 2 BASIC19.3■□□□□ 0.68
CTDNEP1O95476 STARD13-205ENST00000439831 945 ntTSL 2 BASIC19.3■□□□□ 0.68
CTDNEP1O95476 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC19.3■□□□□ 0.68
CTDNEP1O95476 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC19.3■□□□□ 0.68
CTDNEP1O95476 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC19.3■□□□□ 0.68
CTDNEP1O95476 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC19.3■□□□□ 0.68
CTDNEP1O95476 AC064836.3-201ENST00000607928 673 ntBASIC19.3■□□□□ 0.68
CTDNEP1O95476 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTDNEP1O95476 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTDNEP1O95476 LINC01144-201ENST00000626198 1710 ntBASIC19.3■□□□□ 0.68
CTDNEP1O95476 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTDNEP1O95476 AC090340.1-201ENST00000620778 4980 ntBASIC19.3■□□□□ 0.68
CTDNEP1O95476 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTDNEP1O95476 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTDNEP1O95476 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
CTDNEP1O95476 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTDNEP1O95476 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CTDNEP1O95476 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CTDNEP1O95476 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CTDNEP1O95476 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CTDNEP1O95476 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CTDNEP1O95476 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CTDNEP1O95476 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CTDNEP1O95476 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CTDNEP1O95476 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CTDNEP1O95476 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CTDNEP1O95476 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
CTDNEP1O95476 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CTDNEP1O95476 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CTDNEP1O95476 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC19.29■□□□□ 0.68
CTDNEP1O95476 AC007967.2-201ENST00000432613 625 ntBASIC19.29■□□□□ 0.68
CTDNEP1O95476 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC19.29■□□□□ 0.68
CTDNEP1O95476 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CTDNEP1O95476 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC19.29■□□□□ 0.68
CTDNEP1O95476 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC19.29■□□□□ 0.68
CTDNEP1O95476 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
CTDNEP1O95476 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC19.29■□□□□ 0.68
CTDNEP1O95476 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC19.29■□□□□ 0.68
CTDNEP1O95476 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CTDNEP1O95476 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC19.29■□□□□ 0.68
CTDNEP1O95476 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC19.29■□□□□ 0.68
CTDNEP1O95476 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC19.29■□□□□ 0.68
CTDNEP1O95476 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC19.29■□□□□ 0.68
CTDNEP1O95476 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CTDNEP1O95476 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC19.28■□□□□ 0.68
CTDNEP1O95476 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CTDNEP1O95476 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC19.28■□□□□ 0.68
CTDNEP1O95476 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CTDNEP1O95476 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CTDNEP1O95476 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC19.28■□□□□ 0.68
CTDNEP1O95476 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CTDNEP1O95476 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CTDNEP1O95476 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CTDNEP1O95476 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
CTDNEP1O95476 FALEC-201ENST00000416894 566 ntTSL 3 BASIC19.28■□□□□ 0.68
CTDNEP1O95476 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC19.28■□□□□ 0.68
CTDNEP1O95476 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC19.28■□□□□ 0.68
CTDNEP1O95476 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC19.28■□□□□ 0.68
CTDNEP1O95476 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms