Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.31■□□□□ 0.2
SDC3O75056 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SDC3O75056 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SDC3O75056 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SDC3O75056 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
SDC3O75056 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SDC3O75056 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SDC3O75056 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SDC3O75056 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SDC3O75056 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SDC3O75056 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC16.31■□□□□ 0.2
SDC3O75056 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC16.31■□□□□ 0.2
SDC3O75056 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.31■□□□□ 0.2
SDC3O75056 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.31■□□□□ 0.2
SDC3O75056 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC16.31■□□□□ 0.2
SDC3O75056 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC16.31■□□□□ 0.2
SDC3O75056 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.31■□□□□ 0.2
SDC3O75056 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC16.31■□□□□ 0.2
SDC3O75056 AC021097.1-201ENST00000607902 574 ntBASIC16.31■□□□□ 0.2
SDC3O75056 HFE2-206ENST00000634927 506 ntTSL 4 BASIC16.31■□□□□ 0.2
SDC3O75056 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
SDC3O75056 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SDC3O75056 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SDC3O75056 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
SDC3O75056 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
SDC3O75056 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SDC3O75056 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SDC3O75056 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.31■□□□□ 0.2
SDC3O75056 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SDC3O75056 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SDC3O75056 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
SDC3O75056 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SDC3O75056 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SDC3O75056 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SDC3O75056 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SDC3O75056 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SDC3O75056 LINC00895-201ENST00000629028 1637 ntBASIC16.3■□□□□ 0.2
SDC3O75056 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
SDC3O75056 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.3■□□□□ 0.2
SDC3O75056 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SDC3O75056 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SDC3O75056 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
SDC3O75056 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
SDC3O75056 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SDC3O75056 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SDC3O75056 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SDC3O75056 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SDC3O75056 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SDC3O75056 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.3■□□□□ 0.2
SDC3O75056 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.3■□□□□ 0.2
SDC3O75056 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SDC3O75056 AC142381.1-201ENST00000426099 345 ntBASIC16.3■□□□□ 0.2
SDC3O75056 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
SDC3O75056 KRT18P34-201ENST00000488218 1270 ntBASIC16.3■□□□□ 0.2
SDC3O75056 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC16.3■□□□□ 0.2
SDC3O75056 AC027369.6-201ENST00000525520 931 ntBASIC16.3■□□□□ 0.2
SDC3O75056 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.3■□□□□ 0.2
SDC3O75056 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SDC3O75056 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC16.3■□□□□ 0.2
SDC3O75056 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC16.3■□□□□ 0.2
SDC3O75056 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SDC3O75056 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.3■□□□□ 0.2
SDC3O75056 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SDC3O75056 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SDC3O75056 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SDC3O75056 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SDC3O75056 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.3■□□□□ 0.2
SDC3O75056 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC16.3■□□□□ 0.2
SDC3O75056 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
SDC3O75056 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
SDC3O75056 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC16.29■□□□□ 0.2
SDC3O75056 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDC3O75056 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
SDC3O75056 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDC3O75056 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
SDC3O75056 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDC3O75056 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.29■□□□□ 0.2
SDC3O75056 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDC3O75056 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDC3O75056 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDC3O75056 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC16.29■□□□□ 0.2
SDC3O75056 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDC3O75056 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
SDC3O75056 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDC3O75056 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDC3O75056 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDC3O75056 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SDC3O75056 AC241585.1-201ENST00000433527 519 ntBASIC16.29■□□□□ 0.2
SDC3O75056 AC244107.1-201ENST00000442033 332 ntBASIC16.29■□□□□ 0.2
SDC3O75056 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SDC3O75056 RARRES2P9-201ENST00000565168 469 ntBASIC16.29■□□□□ 0.2
SDC3O75056 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC16.29■□□□□ 0.2
SDC3O75056 MIR4492-201ENST00000581627 80 ntBASIC16.29■□□□□ 0.2
SDC3O75056 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC16.29■□□□□ 0.2
SDC3O75056 AC012645.4-201ENST00000610691 1061 ntBASIC16.29■□□□□ 0.2
SDC3O75056 AC018529.1-201ENST00000613063 361 ntBASIC16.29■□□□□ 0.2
SDC3O75056 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDC3O75056 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDC3O75056 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SDC3O75056 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms