Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC14.75□□□□□ -0.05
LMX1BO60663 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LMX1BO60663 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LMX1BO60663 LINC00982-205ENST00000420957 435 ntBASIC14.75□□□□□ -0.05
LMX1BO60663 RPS8P6-201ENST00000426177 609 ntBASIC14.75□□□□□ -0.05
LMX1BO60663 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC14.75□□□□□ -0.05
LMX1BO60663 NMU-202ENST00000505262 693 ntTSL 3 BASIC14.75□□□□□ -0.05
LMX1BO60663 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC14.75□□□□□ -0.05
LMX1BO60663 AC040169.1-201ENST00000565382 521 ntBASIC14.75□□□□□ -0.05
LMX1BO60663 AL139424.1-201ENST00000607572 797 ntBASIC14.75□□□□□ -0.05
LMX1BO60663 AC008735.5-201ENST00000623544 497 ntBASIC14.75□□□□□ -0.05
LMX1BO60663 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LMX1BO60663 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LMX1BO60663 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
LMX1BO60663 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
LMX1BO60663 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
LMX1BO60663 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LMX1BO60663 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LMX1BO60663 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LMX1BO60663 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
LMX1BO60663 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
LMX1BO60663 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
LMX1BO60663 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LMX1BO60663 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LMX1BO60663 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC14.75□□□□□ -0.05
LMX1BO60663 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC14.75□□□□□ -0.05
LMX1BO60663 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LMX1BO60663 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
LMX1BO60663 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
LMX1BO60663 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
LMX1BO60663 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
LMX1BO60663 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LMX1BO60663 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
LMX1BO60663 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC14.74□□□□□ -0.05
LMX1BO60663 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
LMX1BO60663 TUBB8P12-201ENST00000308911 1335 ntBASIC14.74□□□□□ -0.05
LMX1BO60663 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LMX1BO60663 TUBB7P-202ENST00000428444 1305 ntBASIC14.74□□□□□ -0.05
LMX1BO60663 TUBB8P7-204ENST00000567960 1332 ntBASIC14.74□□□□□ -0.05
LMX1BO60663 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC14.74□□□□□ -0.05
LMX1BO60663 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
LMX1BO60663 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
LMX1BO60663 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
LMX1BO60663 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
LMX1BO60663 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
LMX1BO60663 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LMX1BO60663 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
LMX1BO60663 RPSAP43-201ENST00000402237 625 ntBASIC14.74□□□□□ -0.05
LMX1BO60663 GGCT-205ENST00000409436 954 ntTSL 3 BASIC14.74□□□□□ -0.05
LMX1BO60663 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC14.74□□□□□ -0.05
LMX1BO60663 SRP19-202ENST00000445150 833 ntTSL 2 BASIC14.74□□□□□ -0.05
LMX1BO60663 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC14.74□□□□□ -0.05
LMX1BO60663 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC14.74□□□□□ -0.05
LMX1BO60663 MSRA-206ENST00000521209 814 ntTSL 3 BASIC14.74□□□□□ -0.05
LMX1BO60663 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC14.74□□□□□ -0.05
LMX1BO60663 AC105339.3-201ENST00000560043 636 ntBASIC14.74□□□□□ -0.05
LMX1BO60663 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC14.74□□□□□ -0.05
LMX1BO60663 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC14.74□□□□□ -0.05
LMX1BO60663 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC14.74□□□□□ -0.05
LMX1BO60663 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LMX1BO60663 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
LMX1BO60663 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LMX1BO60663 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
LMX1BO60663 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
LMX1BO60663 PC-204ENST00000524491 1714 ntTSL 2 BASIC14.74□□□□□ -0.05
LMX1BO60663 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
LMX1BO60663 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC14.74□□□□□ -0.05
LMX1BO60663 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
LMX1BO60663 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LMX1BO60663 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LMX1BO60663 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
LMX1BO60663 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC14.74□□□□□ -0.05
LMX1BO60663 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LMX1BO60663 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
LMX1BO60663 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LMX1BO60663 CYP2T1P-202ENST00000641596 2535 ntBASIC14.73□□□□□ -0.05
LMX1BO60663 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC14.73□□□□□ -0.05
LMX1BO60663 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
LMX1BO60663 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
LMX1BO60663 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC14.73□□□□□ -0.05
LMX1BO60663 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LMX1BO60663 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
LMX1BO60663 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
LMX1BO60663 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
LMX1BO60663 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LMX1BO60663 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC14.73□□□□□ -0.05
LMX1BO60663 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LMX1BO60663 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
LMX1BO60663 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC14.73□□□□□ -0.05
LMX1BO60663 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC14.73□□□□□ -0.05
LMX1BO60663 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
LMX1BO60663 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
LMX1BO60663 IMP4-203ENST00000409935 958 ntTSL 5 BASIC14.73□□□□□ -0.05
LMX1BO60663 GPX1P2-201ENST00000429271 606 ntBASIC14.73□□□□□ -0.05
LMX1BO60663 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
LMX1BO60663 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
LMX1BO60663 RNA5SP416-201ENST00000516838 111 ntBASIC14.73□□□□□ -0.05
LMX1BO60663 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LMX1BO60663 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC14.73□□□□□ -0.05
LMX1BO60663 AC012640.2-201ENST00000561606 901 ntBASIC14.73□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms