Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
PROM1O43490 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
PROM1O43490 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PROM1O43490 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PROM1O43490 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PROM1O43490 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
PROM1O43490 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC15.91■□□□□ 0.14
PROM1O43490 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PROM1O43490 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PROM1O43490 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC15.91■□□□□ 0.14
PROM1O43490 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
PROM1O43490 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC15.91■□□□□ 0.14
PROM1O43490 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
PROM1O43490 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC15.91■□□□□ 0.14
PROM1O43490 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
PROM1O43490 AL513477.1-201ENST00000602865 2407 ntBASIC15.9■□□□□ 0.14
PROM1O43490 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PROM1O43490 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
PROM1O43490 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC15.9■□□□□ 0.14
PROM1O43490 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PROM1O43490 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC15.9■□□□□ 0.14
PROM1O43490 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC15.9■□□□□ 0.14
PROM1O43490 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PROM1O43490 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PROM1O43490 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PROM1O43490 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PROM1O43490 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC15.9■□□□□ 0.14
PROM1O43490 PCDHB19P-201ENST00000570871 2371 ntBASIC15.9■□□□□ 0.14
PROM1O43490 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC15.9■□□□□ 0.14
PROM1O43490 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
PROM1O43490 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
PROM1O43490 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PROM1O43490 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PROM1O43490 KRT18P13-201ENST00000400056 1290 ntBASIC15.9■□□□□ 0.14
PROM1O43490 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
PROM1O43490 RPP21-221ENST00000428040 594 ntTSL 2 BASIC15.9■□□□□ 0.14
PROM1O43490 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PROM1O43490 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
PROM1O43490 CXCL1P1-201ENST00000502804 216 ntBASIC15.9■□□□□ 0.14
PROM1O43490 POLD4-207ENST00000531239 584 ntTSL 2 BASIC15.9■□□□□ 0.14
PROM1O43490 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PROM1O43490 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PROM1O43490 RPL18-209ENST00000550645 463 ntTSL 5 BASIC15.9■□□□□ 0.14
PROM1O43490 RPL18-214ENST00000552588 559 ntTSL 3 BASIC15.9■□□□□ 0.14
PROM1O43490 AC034105.1-201ENST00000563488 319 ntBASIC15.9■□□□□ 0.14
PROM1O43490 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC15.9■□□□□ 0.14
PROM1O43490 ACTL9-202ENST00000612068 1252 ntBASIC15.9■□□□□ 0.14
PROM1O43490 NME4-212ENST00000621774 904 ntTSL 3 BASIC15.9■□□□□ 0.14
PROM1O43490 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PROM1O43490 AC104109.2-201ENST00000602919 1418 ntBASIC15.9■□□□□ 0.14
PROM1O43490 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
PROM1O43490 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PROM1O43490 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
PROM1O43490 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PROM1O43490 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC15.9■□□□□ 0.14
PROM1O43490 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PROM1O43490 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PROM1O43490 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PROM1O43490 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PROM1O43490 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC15.9■□□□□ 0.14
PROM1O43490 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC15.9■□□□□ 0.14
PROM1O43490 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC15.9■□□□□ 0.14
PROM1O43490 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC15.9■□□□□ 0.14
PROM1O43490 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
PROM1O43490 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PROM1O43490 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PROM1O43490 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PROM1O43490 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC15.9■□□□□ 0.14
PROM1O43490 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC15.89■□□□□ 0.13
PROM1O43490 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PROM1O43490 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PROM1O43490 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
PROM1O43490 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
PROM1O43490 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
PROM1O43490 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
PROM1O43490 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
PROM1O43490 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
PROM1O43490 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PROM1O43490 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PROM1O43490 HLA-A-202ENST00000376806 1854 ntBASIC15.89■□□□□ 0.13
PROM1O43490 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC15.89■□□□□ 0.13
PROM1O43490 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
PROM1O43490 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
PROM1O43490 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
PROM1O43490 HCG4B-203ENST00000450128 991 ntBASIC15.89■□□□□ 0.13
PROM1O43490 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC15.89■□□□□ 0.13
PROM1O43490 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PROM1O43490 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC15.89■□□□□ 0.13
PROM1O43490 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
PROM1O43490 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC15.89■□□□□ 0.13
PROM1O43490 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PROM1O43490 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC15.89■□□□□ 0.13
PROM1O43490 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
PROM1O43490 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PROM1O43490 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC15.89■□□□□ 0.13
PROM1O43490 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PROM1O43490 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
PROM1O43490 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PROM1O43490 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PROM1O43490 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms