Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC15.84■□□□□ 0.13
ATG4BQ9Y4P1 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
ATG4BQ9Y4P1 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
ATG4BQ9Y4P1 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.13
ATG4BQ9Y4P1 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
ATG4BQ9Y4P1 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
ATG4BQ9Y4P1 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
ATG4BQ9Y4P1 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
ATG4BQ9Y4P1 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ATG4BQ9Y4P1 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ATG4BQ9Y4P1 HMGA1P7-201ENST00000406908 502 ntBASIC15.83■□□□□ 0.12
ATG4BQ9Y4P1 CDK2AP2P3-201ENST00000422476 372 ntBASIC15.83■□□□□ 0.12
ATG4BQ9Y4P1 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC15.83■□□□□ 0.12
ATG4BQ9Y4P1 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC15.83■□□□□ 0.12
ATG4BQ9Y4P1 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
ATG4BQ9Y4P1 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
ATG4BQ9Y4P1 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC15.83■□□□□ 0.12
ATG4BQ9Y4P1 CALM1-205ENST00000553542 877 ntTSL 5 BASIC15.83■□□□□ 0.12
ATG4BQ9Y4P1 CAND2-206ENST00000626378 333 ntTSL 5 BASIC15.83■□□□□ 0.12
ATG4BQ9Y4P1 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ATG4BQ9Y4P1 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
ATG4BQ9Y4P1 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
ATG4BQ9Y4P1 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC15.83■□□□□ 0.12
ATG4BQ9Y4P1 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC15.83■□□□□ 0.12
ATG4BQ9Y4P1 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC15.83■□□□□ 0.12
ATG4BQ9Y4P1 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ATG4BQ9Y4P1 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC15.83■□□□□ 0.12
ATG4BQ9Y4P1 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ATG4BQ9Y4P1 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ATG4BQ9Y4P1 AC124067.4-201ENST00000519691 2379 ntBASIC15.83■□□□□ 0.12
ATG4BQ9Y4P1 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
ATG4BQ9Y4P1 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ATG4BQ9Y4P1 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4BQ9Y4P1 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
ATG4BQ9Y4P1 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4BQ9Y4P1 SLC9A3P2-201ENST00000447821 2021 ntBASIC15.82■□□□□ 0.12
ATG4BQ9Y4P1 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4BQ9Y4P1 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4BQ9Y4P1 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC15.82■□□□□ 0.12
ATG4BQ9Y4P1 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4BQ9Y4P1 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC15.82■□□□□ 0.12
ATG4BQ9Y4P1 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC15.82■□□□□ 0.12
ATG4BQ9Y4P1 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4BQ9Y4P1 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4BQ9Y4P1 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4BQ9Y4P1 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4BQ9Y4P1 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC15.82■□□□□ 0.12
ATG4BQ9Y4P1 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4BQ9Y4P1 DDT-204ENST00000404092 805 ntTSL 3 BASIC15.82■□□□□ 0.12
ATG4BQ9Y4P1 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
ATG4BQ9Y4P1 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC15.82■□□□□ 0.12
ATG4BQ9Y4P1 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4BQ9Y4P1 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC15.82■□□□□ 0.12
ATG4BQ9Y4P1 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC15.82■□□□□ 0.12
ATG4BQ9Y4P1 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC15.82■□□□□ 0.12
ATG4BQ9Y4P1 AQP6-205ENST00000618286 829 ntTSL 5 BASIC15.82■□□□□ 0.12
ATG4BQ9Y4P1 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4BQ9Y4P1 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4BQ9Y4P1 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC15.82■□□□□ 0.12
ATG4BQ9Y4P1 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4BQ9Y4P1 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC15.82■□□□□ 0.12
ATG4BQ9Y4P1 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4BQ9Y4P1 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC15.82■□□□□ 0.12
ATG4BQ9Y4P1 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4BQ9Y4P1 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 WDR53-204ENST00000433160 887 ntTSL 5 BASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 HS6ST1P1-201ENST00000481504 1234 ntBASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 POLD2P1-201ENST00000511220 997 ntBASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 RPL28-209ENST00000560055 670 ntTSL 3 BASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 AL031432.2-201ENST00000566714 459 ntBASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 AL928711.1-201ENST00000570165 459 ntBASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 ALOX12P2-203ENST00000570921 1945 ntBASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 AC140113.2-201ENST00000604370 208 ntBASIC15.81■□□□□ 0.12
ATG4BQ9Y4P1 AC027601.4-201ENST00000611259 610 ntBASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms