Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 GGTLC5P-201ENST00000617623 998 ntBASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 SDHD-206ENST00000528182 754 ntTSL 3 BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 BSG-214ENST00000614867 960 ntTSL 3 BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 AC012313.10-201ENST00000623509 926 ntBASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 BLK-205ENST00000529894 2017 ntTSL 5 BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LIMCH1Q9UPQ0 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 AC007950.2-201ENST00000615045 2347 ntBASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 AL596087.1-201ENST00000400979 1969 ntBASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 RPS2P1-201ENST00000434010 821 ntBASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 IFNL4P1-201ENST00000607083 540 ntBASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 AC129492.6-201ENST00000611383 1305 ntBASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMCH1Q9UPQ0 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIMCH1Q9UPQ0 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC19.69■□□□□ 0.74
LIMCH1Q9UPQ0 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIMCH1Q9UPQ0 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIMCH1Q9UPQ0 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms