Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 RPS8P6-201ENST00000426177 609 ntBASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 AGGF1P2-201ENST00000426656 2106 ntBASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 CNN2P11-201ENST00000429351 262 ntBASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 SPCS2P4-201ENST00000436160 681 ntBASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 KRT18P34-201ENST00000488218 1270 ntBASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 AC084121.4-201ENST00000641598 221 ntBASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 AF228730.8-201ENST00000642140 221 ntBASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 GPAA1P2-202ENST00000606848 1787 ntBASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ECHDC3Q96DC8 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 RNF34-208ENST00000555076 593 ntTSL 3 BASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 SNHG9-202ENST00000564014 471 ntBASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 AC004835.2-201ENST00000603762 682 ntBASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 AL596442.2-201ENST00000610240 980 ntBASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
ECHDC3Q96DC8 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
ECHDC3Q96DC8 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.66■□□□□ 0.26
ECHDC3Q96DC8 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
ECHDC3Q96DC8 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 67.6 ms