Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 AC022188.1-201ENST00000620960 1664 ntBASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 AC002310.6-201ENST00000624451 1377 ntBASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 FGFR3P6-201ENST00000457012 610 ntBASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 AC087163.2-201ENST00000457299 853 ntBASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 MTDHP4-201ENST00000600287 670 ntBASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 AL355877.3-201ENST00000622820 899 ntBASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
ATG4AQ8WYN0 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 AL031731.1-201ENST00000642131 2094 ntBASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 GGT4P-201ENST00000623672 1708 ntBASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 PTCHD3P3-201ENST00000403073 906 ntBASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 UPK3BP1-201ENST00000428678 509 ntBASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 KRT18P31-201ENST00000506277 1292 ntBASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms