Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
HSPG2P98160 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC10.16□□□□□ -0.78
HSPG2P98160 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC10.16□□□□□ -0.78
HSPG2P98160 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC10.16□□□□□ -0.78
HSPG2P98160 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
HSPG2P98160 WIZP1-201ENST00000531444 2299 ntBASIC10.16□□□□□ -0.78
HSPG2P98160 AC012317.2-201ENST00000623305 2251 ntBASIC10.16□□□□□ -0.78
HSPG2P98160 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
HSPG2P98160 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
HSPG2P98160 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
HSPG2P98160 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC10.15□□□□□ -0.78
HSPG2P98160 FOS-202ENST00000535987 1402 ntTSL 2 BASIC10.15□□□□□ -0.78
HSPG2P98160 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
HSPG2P98160 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
HSPG2P98160 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
HSPG2P98160 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC10.15□□□□□ -0.78
HSPG2P98160 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC10.15□□□□□ -0.78
HSPG2P98160 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC10.15□□□□□ -0.78
HSPG2P98160 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC10.15□□□□□ -0.78
HSPG2P98160 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC10.15□□□□□ -0.78
HSPG2P98160 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC10.15□□□□□ -0.78
HSPG2P98160 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC10.15□□□□□ -0.78
HSPG2P98160 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC10.15□□□□□ -0.78
HSPG2P98160 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC10.15□□□□□ -0.78
HSPG2P98160 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
HSPG2P98160 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC10.15□□□□□ -0.78
HSPG2P98160 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
HSPG2P98160 PTK7-212ENST00000476760 902 ntTSL 2 BASIC10.15□□□□□ -0.78
HSPG2P98160 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
HSPG2P98160 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC10.15□□□□□ -0.78
HSPG2P98160 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC10.15□□□□□ -0.78
HSPG2P98160 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC10.15□□□□□ -0.78
HSPG2P98160 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
HSPG2P98160 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC10.15□□□□□ -0.78
HSPG2P98160 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC10.15□□□□□ -0.78
HSPG2P98160 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC10.15□□□□□ -0.78
HSPG2P98160 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC10.15□□□□□ -0.78
HSPG2P98160 SNX33P1-201ENST00000592116 1762 ntBASIC10.15□□□□□ -0.78
HSPG2P98160 USE1-206ENST00000595101 1776 ntTSL 2 BASIC10.15□□□□□ -0.78
HSPG2P98160 KRT8P37-201ENST00000451609 1420 ntBASIC10.15□□□□□ -0.78
HSPG2P98160 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
HSPG2P98160 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC10.15□□□□□ -0.78
HSPG2P98160 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
HSPG2P98160 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC10.15□□□□□ -0.78
HSPG2P98160 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
HSPG2P98160 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
HSPG2P98160 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC10.15□□□□□ -0.78
HSPG2P98160 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
HSPG2P98160 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC10.15□□□□□ -0.78
HSPG2P98160 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC10.15□□□□□ -0.78
HSPG2P98160 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
HSPG2P98160 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC10.15□□□□□ -0.79
HSPG2P98160 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC10.15□□□□□ -0.79
HSPG2P98160 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
HSPG2P98160 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC10.15□□□□□ -0.79
HSPG2P98160 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
HSPG2P98160 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC10.15□□□□□ -0.79
HSPG2P98160 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
HSPG2P98160 SLC25A24-204ENST00000569674 2357 ntBASIC10.15□□□□□ -0.79
HSPG2P98160 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
HSPG2P98160 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
HSPG2P98160 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
HSPG2P98160 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
HSPG2P98160 MTX1P1-201ENST00000440904 838 ntBASIC10.14□□□□□ -0.79
HSPG2P98160 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
HSPG2P98160 RNA5SP410-201ENST00000516285 106 ntBASIC10.14□□□□□ -0.79
HSPG2P98160 SCARNA20.5-201ENST00000516991 142 ntBASIC10.14□□□□□ -0.79
HSPG2P98160 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC10.14□□□□□ -0.79
HSPG2P98160 RPL8-205ENST00000527914 551 ntTSL 3 BASIC10.14□□□□□ -0.79
HSPG2P98160 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
HSPG2P98160 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
HSPG2P98160 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC10.14□□□□□ -0.79
HSPG2P98160 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
HSPG2P98160 GRN-222ENST00000639447 1314 ntTSL 2 BASIC10.14□□□□□ -0.79
HSPG2P98160 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
HSPG2P98160 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
HSPG2P98160 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
HSPG2P98160 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC10.14□□□□□ -0.79
HSPG2P98160 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC10.14□□□□□ -0.79
HSPG2P98160 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
HSPG2P98160 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC10.14□□□□□ -0.79
HSPG2P98160 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC10.14□□□□□ -0.79
HSPG2P98160 VMO1-203ENST00000416307 712 ntTSL 2 BASIC10.14□□□□□ -0.79
HSPG2P98160 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
HSPG2P98160 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC10.14□□□□□ -0.79
HSPG2P98160 AC069218.1-201ENST00000435269 762 ntBASIC10.14□□□□□ -0.79
HSPG2P98160 AC114501.1-201ENST00000445949 172 ntBASIC10.14□□□□□ -0.79
HSPG2P98160 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
HSPG2P98160 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC10.14□□□□□ -0.79
HSPG2P98160 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC10.14□□□□□ -0.79
HSPG2P98160 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC10.14□□□□□ -0.79
HSPG2P98160 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC10.14□□□□□ -0.79
HSPG2P98160 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC10.14□□□□□ -0.79
HSPG2P98160 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
HSPG2P98160 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
HSPG2P98160 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
HSPG2P98160 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC10.14□□□□□ -0.79
HSPG2P98160 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC10.14□□□□□ -0.79
HSPG2P98160 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC10.14□□□□□ -0.79
HSPG2P98160 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC10.14□□□□□ -0.79
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms