Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC19.96■□□□□ 0.79
BRCA1P38398 AC079316.1-201ENST00000548397 411 ntBASIC19.96■□□□□ 0.79
BRCA1P38398 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
BRCA1P38398 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
BRCA1P38398 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC19.96■□□□□ 0.79
BRCA1P38398 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
BRCA1P38398 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC19.96■□□□□ 0.79
BRCA1P38398 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC19.96■□□□□ 0.79
BRCA1P38398 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC19.96■□□□□ 0.79
BRCA1P38398 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.95■□□□□ 0.78
BRCA1P38398 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
BRCA1P38398 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC19.95■□□□□ 0.78
BRCA1P38398 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
BRCA1P38398 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.95■□□□□ 0.78
BRCA1P38398 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC19.95■□□□□ 0.78
BRCA1P38398 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
BRCA1P38398 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
BRCA1P38398 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC19.95■□□□□ 0.78
BRCA1P38398 MGST3-203ENST00000367885 680 ntTSL 2 BASIC19.95■□□□□ 0.78
BRCA1P38398 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
BRCA1P38398 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
BRCA1P38398 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
BRCA1P38398 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
BRCA1P38398 AZGP1P1-201ENST00000411909 902 ntBASIC19.95■□□□□ 0.78
BRCA1P38398 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC19.95■□□□□ 0.78
BRCA1P38398 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
BRCA1P38398 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
BRCA1P38398 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
BRCA1P38398 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC19.95■□□□□ 0.78
BRCA1P38398 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC19.95■□□□□ 0.78
BRCA1P38398 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC19.95■□□□□ 0.78
BRCA1P38398 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC19.95■□□□□ 0.78
BRCA1P38398 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
BRCA1P38398 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
BRCA1P38398 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
BRCA1P38398 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC19.95■□□□□ 0.78
BRCA1P38398 AC006277.1-201ENST00000624348 1610 ntBASIC19.95■□□□□ 0.78
BRCA1P38398 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
BRCA1P38398 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
BRCA1P38398 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
BRCA1P38398 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
BRCA1P38398 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
BRCA1P38398 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
BRCA1P38398 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
BRCA1P38398 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC19.94■□□□□ 0.78
BRCA1P38398 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
BRCA1P38398 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC19.94■□□□□ 0.78
BRCA1P38398 KRT8P13-201ENST00000463294 1010 ntBASIC19.94■□□□□ 0.78
BRCA1P38398 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC19.94■□□□□ 0.78
BRCA1P38398 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC19.94■□□□□ 0.78
BRCA1P38398 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC19.94■□□□□ 0.78
BRCA1P38398 ACTG1P17-201ENST00000558391 1119 ntBASIC19.94■□□□□ 0.78
BRCA1P38398 AC133539.2-201ENST00000604757 467 ntBASIC19.94■□□□□ 0.78
BRCA1P38398 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC19.94■□□□□ 0.78
BRCA1P38398 AL138688.1-201ENST00000624851 1594 ntBASIC19.94■□□□□ 0.78
BRCA1P38398 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
BRCA1P38398 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
BRCA1P38398 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
BRCA1P38398 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
BRCA1P38398 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
BRCA1P38398 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
BRCA1P38398 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.94■□□□□ 0.78
BRCA1P38398 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC19.94■□□□□ 0.78
BRCA1P38398 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
BRCA1P38398 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC19.94■□□□□ 0.78
BRCA1P38398 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
BRCA1P38398 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC19.94■□□□□ 0.78
BRCA1P38398 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
BRCA1P38398 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
BRCA1P38398 BCRP2-202ENST00000447763 634 ntBASIC19.94■□□□□ 0.78
BRCA1P38398 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC19.94■□□□□ 0.78
BRCA1P38398 BCRP6-201ENST00000510112 632 ntBASIC19.94■□□□□ 0.78
BRCA1P38398 BCRP7-201ENST00000511549 544 ntBASIC19.94■□□□□ 0.78
BRCA1P38398 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
BRCA1P38398 SUOX-214ENST00000551841 906 ntTSL 3 BASIC19.94■□□□□ 0.78
BRCA1P38398 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC19.94■□□□□ 0.78
BRCA1P38398 AL118558.3-201ENST00000607414 1079 ntBASIC19.94■□□□□ 0.78
BRCA1P38398 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC19.94■□□□□ 0.78
BRCA1P38398 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
BRCA1P38398 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
BRCA1P38398 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
BRCA1P38398 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC19.93■□□□□ 0.78
BRCA1P38398 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
BRCA1P38398 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
BRCA1P38398 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
BRCA1P38398 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
BRCA1P38398 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
BRCA1P38398 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.93■□□□□ 0.78
BRCA1P38398 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
BRCA1P38398 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
BRCA1P38398 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
BRCA1P38398 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
BRCA1P38398 YBX1P6-201ENST00000442962 1002 ntBASIC19.93■□□□□ 0.78
BRCA1P38398 AC012441.1-201ENST00000446669 685 ntBASIC19.93■□□□□ 0.78
BRCA1P38398 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC19.93■□□□□ 0.78
BRCA1P38398 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC19.93■□□□□ 0.78
BRCA1P38398 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
BRCA1P38398 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC19.93■□□□□ 0.78
BRCA1P38398 AL365330.1-201ENST00000607459 531 ntBASIC19.93■□□□□ 0.78
BRCA1P38398 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms