Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
COL6A3P12111 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC17.1■□□□□ 0.33
COL6A3P12111 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A3P12111 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A3P12111 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.1■□□□□ 0.33
COL6A3P12111 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
COL6A3P12111 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC17.1■□□□□ 0.33
COL6A3P12111 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A3P12111 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
COL6A3P12111 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
COL6A3P12111 AHCYP2-201ENST00000430630 1300 ntBASIC17.1■□□□□ 0.33
COL6A3P12111 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A3P12111 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC17.1■□□□□ 0.33
COL6A3P12111 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
COL6A3P12111 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC17.1■□□□□ 0.33
COL6A3P12111 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A3P12111 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
COL6A3P12111 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
COL6A3P12111 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A3P12111 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A3P12111 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A3P12111 AL671710.1-201ENST00000610245 2349 ntBASIC17.1■□□□□ 0.33
COL6A3P12111 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A3P12111 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
COL6A3P12111 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC17.1■□□□□ 0.33
COL6A3P12111 APOA2-204ENST00000464492 530 ntTSL 3 BASIC17.1■□□□□ 0.33
COL6A3P12111 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC17.1■□□□□ 0.33
COL6A3P12111 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
COL6A3P12111 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A3P12111 EIF5AP2-201ENST00000585668 1047 ntBASIC17.1■□□□□ 0.33
COL6A3P12111 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.09■□□□□ 0.33
COL6A3P12111 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A3P12111 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
COL6A3P12111 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A3P12111 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A3P12111 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A3P12111 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A3P12111 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC17.09■□□□□ 0.33
COL6A3P12111 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC17.09■□□□□ 0.33
COL6A3P12111 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A3P12111 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
COL6A3P12111 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A3P12111 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
COL6A3P12111 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
COL6A3P12111 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A3P12111 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A3P12111 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A3P12111 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC17.09■□□□□ 0.33
COL6A3P12111 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A3P12111 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.09■□□□□ 0.33
COL6A3P12111 AC005332.7-201ENST00000614046 2005 ntBASIC17.09■□□□□ 0.33
COL6A3P12111 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A3P12111 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A3P12111 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC17.09■□□□□ 0.33
COL6A3P12111 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC17.09■□□□□ 0.33
COL6A3P12111 TBCB-211ENST00000589996 724 ntTSL 3 BASIC17.09■□□□□ 0.33
COL6A3P12111 COX6A1P2-201ENST00000620597 330 ntBASIC17.09■□□□□ 0.33
COL6A3P12111 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A3P12111 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A3P12111 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.09■□□□□ 0.33
COL6A3P12111 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL6A3P12111 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
COL6A3P12111 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL6A3P12111 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL6A3P12111 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL6A3P12111 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
COL6A3P12111 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC17.08■□□□□ 0.33
COL6A3P12111 RPL8-205ENST00000527914 551 ntTSL 3 BASIC17.08■□□□□ 0.33
COL6A3P12111 ENPP7P5-201ENST00000541031 1031 ntBASIC17.08■□□□□ 0.33
COL6A3P12111 RHOXF1P1-202ENST00000635473 501 ntBASIC17.08■□□□□ 0.33
COL6A3P12111 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL6A3P12111 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL6A3P12111 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL6A3P12111 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
COL6A3P12111 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
COL6A3P12111 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
COL6A3P12111 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL6A3P12111 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL6A3P12111 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.08■□□□□ 0.32
COL6A3P12111 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
COL6A3P12111 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.08■□□□□ 0.32
COL6A3P12111 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC17.08■□□□□ 0.32
COL6A3P12111 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL6A3P12111 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL6A3P12111 CYP46A4P-201ENST00000414953 267 ntBASIC17.08■□□□□ 0.32
COL6A3P12111 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC17.08■□□□□ 0.32
COL6A3P12111 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC17.08■□□□□ 0.32
COL6A3P12111 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC17.08■□□□□ 0.32
COL6A3P12111 QPRT-203ENST00000562473 579 ntTSL 3 BASIC17.08■□□□□ 0.32
COL6A3P12111 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC17.08■□□□□ 0.32
COL6A3P12111 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC17.08■□□□□ 0.32
COL6A3P12111 AL592295.3-201ENST00000637155 863 ntTSL 5 BASIC17.08■□□□□ 0.32
COL6A3P12111 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
COL6A3P12111 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
COL6A3P12111 CYP51A1P3-201ENST00000400072 1428 ntBASIC17.08■□□□□ 0.32
COL6A3P12111 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL6A3P12111 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL6A3P12111 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL6A3P12111 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL6A3P12111 AL355864.2-201ENST00000447420 863 ntBASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms