Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
APOBP04114 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
APOBP04114 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC10.24□□□□□ -0.77
APOBP04114 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC10.24□□□□□ -0.77
APOBP04114 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC10.24□□□□□ -0.77
APOBP04114 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC10.24□□□□□ -0.77
APOBP04114 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC10.24□□□□□ -0.77
APOBP04114 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
APOBP04114 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
APOBP04114 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
APOBP04114 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
APOBP04114 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC10.23□□□□□ -0.77
APOBP04114 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
APOBP04114 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC10.23□□□□□ -0.77
APOBP04114 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
APOBP04114 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC10.23□□□□□ -0.77
APOBP04114 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC10.23□□□□□ -0.77
APOBP04114 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC10.23□□□□□ -0.77
APOBP04114 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
APOBP04114 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
APOBP04114 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC10.23□□□□□ -0.77
APOBP04114 RELA-227ENST00000615805 2236 ntTSL 5 BASIC10.23□□□□□ -0.77
APOBP04114 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC10.23□□□□□ -0.77
APOBP04114 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC10.23□□□□□ -0.77
APOBP04114 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
APOBP04114 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC10.23□□□□□ -0.77
APOBP04114 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC10.23□□□□□ -0.77
APOBP04114 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC10.23□□□□□ -0.77
APOBP04114 AC253536.4-201ENST00000440539 267 ntBASIC10.23□□□□□ -0.77
APOBP04114 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC10.23□□□□□ -0.77
APOBP04114 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
APOBP04114 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC10.23□□□□□ -0.77
APOBP04114 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC10.23□□□□□ -0.77
APOBP04114 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC10.23□□□□□ -0.77
APOBP04114 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
APOBP04114 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
APOBP04114 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
APOBP04114 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC10.23□□□□□ -0.77
APOBP04114 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC10.23□□□□□ -0.77
APOBP04114 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
APOBP04114 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC10.23□□□□□ -0.77
APOBP04114 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
APOBP04114 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
APOBP04114 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
APOBP04114 FHL2-212ENST00000607522 759 ntTSL 2 BASIC10.23□□□□□ -0.77
APOBP04114 AC244669.2-201ENST00000612320 853 ntBASIC10.23□□□□□ -0.77
APOBP04114 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC10.23□□□□□ -0.77
APOBP04114 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
APOBP04114 AC006277.1-201ENST00000624348 1610 ntBASIC10.23□□□□□ -0.77
APOBP04114 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
APOBP04114 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC10.23□□□□□ -0.77
APOBP04114 AL589702.1-201ENST00000641229 1509 ntBASIC10.23□□□□□ -0.77
APOBP04114 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
APOBP04114 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC10.23□□□□□ -0.77
APOBP04114 KRT8P39-201ENST00000396270 1433 ntBASIC10.23□□□□□ -0.77
APOBP04114 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
APOBP04114 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC10.23□□□□□ -0.77
APOBP04114 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
APOBP04114 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
APOBP04114 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC10.23□□□□□ -0.77
APOBP04114 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
APOBP04114 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC10.23□□□□□ -0.77
APOBP04114 AC138627.1-207ENST00000641560 1006 ntBASIC10.23□□□□□ -0.77
APOBP04114 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
APOBP04114 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC10.22□□□□□ -0.77
APOBP04114 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC10.22□□□□□ -0.77
APOBP04114 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
APOBP04114 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
APOBP04114 GZMB-202ENST00000382540 816 ntTSL 5 BASIC10.22□□□□□ -0.77
APOBP04114 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
APOBP04114 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC10.22□□□□□ -0.77
APOBP04114 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC10.22□□□□□ -0.77
APOBP04114 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC10.22□□□□□ -0.77
APOBP04114 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
APOBP04114 AP001889.1-201ENST00000525414 633 ntBASIC10.22□□□□□ -0.77
APOBP04114 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
APOBP04114 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC10.22□□□□□ -0.77
APOBP04114 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
APOBP04114 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC10.22□□□□□ -0.77
APOBP04114 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
APOBP04114 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC10.22□□□□□ -0.77
APOBP04114 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC10.22□□□□□ -0.77
APOBP04114 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC10.22□□□□□ -0.77
APOBP04114 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC10.22□□□□□ -0.77
APOBP04114 HIST2H2BC-201ENST00000498492 580 ntBASIC10.22□□□□□ -0.77
APOBP04114 AC079328.1-201ENST00000560358 952 ntBASIC10.22□□□□□ -0.77
APOBP04114 AC021097.1-201ENST00000607902 574 ntBASIC10.22□□□□□ -0.77
APOBP04114 CU634019.7-201ENST00000624153 1185 ntBASIC10.22□□□□□ -0.77
APOBP04114 FP236241.2-201ENST00000624906 1185 ntBASIC10.22□□□□□ -0.77
APOBP04114 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
APOBP04114 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC10.22□□□□□ -0.77
APOBP04114 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
APOBP04114 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
APOBP04114 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
APOBP04114 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC10.22□□□□□ -0.77
APOBP04114 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
APOBP04114 AGER-203ENST00000375065 665 ntTSL 2 BASIC10.22□□□□□ -0.77
APOBP04114 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC10.22□□□□□ -0.77
APOBP04114 KRT43P-201ENST00000434019 910 ntBASIC10.22□□□□□ -0.77
APOBP04114 AC007551.1-201ENST00000457394 519 ntBASIC10.22□□□□□ -0.77
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms