Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC19.75■□□□□ 0.75
LIMCH1Q9UPQ0 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC19.75■□□□□ 0.75
LIMCH1Q9UPQ0 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMCH1Q9UPQ0 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC19.75■□□□□ 0.75
LIMCH1Q9UPQ0 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
LIMCH1Q9UPQ0 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
LIMCH1Q9UPQ0 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMCH1Q9UPQ0 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC19.75■□□□□ 0.75
LIMCH1Q9UPQ0 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMCH1Q9UPQ0 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC19.75■□□□□ 0.75
LIMCH1Q9UPQ0 AC046158.3-201ENST00000624947 2558 ntBASIC19.75■□□□□ 0.75
LIMCH1Q9UPQ0 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LIMCH1Q9UPQ0 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LIMCH1Q9UPQ0 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC19.75■□□□□ 0.75
LIMCH1Q9UPQ0 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC19.75■□□□□ 0.75
LIMCH1Q9UPQ0 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC19.74■□□□□ 0.75
LIMCH1Q9UPQ0 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC19.74■□□□□ 0.75
LIMCH1Q9UPQ0 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC19.74■□□□□ 0.75
LIMCH1Q9UPQ0 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC19.74■□□□□ 0.75
LIMCH1Q9UPQ0 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC19.74■□□□□ 0.75
LIMCH1Q9UPQ0 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMCH1Q9UPQ0 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMCH1Q9UPQ0 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LIMCH1Q9UPQ0 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC19.74■□□□□ 0.75
LIMCH1Q9UPQ0 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC19.74■□□□□ 0.75
LIMCH1Q9UPQ0 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC19.74■□□□□ 0.75
LIMCH1Q9UPQ0 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMCH1Q9UPQ0 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LIMCH1Q9UPQ0 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LIMCH1Q9UPQ0 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC19.74■□□□□ 0.75
LIMCH1Q9UPQ0 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC19.74■□□□□ 0.75
LIMCH1Q9UPQ0 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC19.74■□□□□ 0.75
LIMCH1Q9UPQ0 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC19.74■□□□□ 0.75
LIMCH1Q9UPQ0 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMCH1Q9UPQ0 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
LIMCH1Q9UPQ0 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMCH1Q9UPQ0 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
LIMCH1Q9UPQ0 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMCH1Q9UPQ0 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC19.74■□□□□ 0.75
LIMCH1Q9UPQ0 AC022188.1-201ENST00000620960 1664 ntBASIC19.74■□□□□ 0.75
LIMCH1Q9UPQ0 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMCH1Q9UPQ0 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC19.74■□□□□ 0.75
LIMCH1Q9UPQ0 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMCH1Q9UPQ0 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC19.74■□□□□ 0.75
LIMCH1Q9UPQ0 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LIMCH1Q9UPQ0 CICP6-201ENST00000457191 2729 ntBASIC19.74■□□□□ 0.75
LIMCH1Q9UPQ0 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMCH1Q9UPQ0 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LIMCH1Q9UPQ0 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIMCH1Q9UPQ0 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
LIMCH1Q9UPQ0 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIMCH1Q9UPQ0 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIMCH1Q9UPQ0 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
LIMCH1Q9UPQ0 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LIMCH1Q9UPQ0 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
LIMCH1Q9UPQ0 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIMCH1Q9UPQ0 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIMCH1Q9UPQ0 AC073621.1-201ENST00000392730 636 ntBASIC19.73■□□□□ 0.75
LIMCH1Q9UPQ0 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC19.73■□□□□ 0.75
LIMCH1Q9UPQ0 RPS15P9-201ENST00000494093 319 ntBASIC19.73■□□□□ 0.75
LIMCH1Q9UPQ0 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC19.73■□□□□ 0.75
LIMCH1Q9UPQ0 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC19.73■□□□□ 0.75
LIMCH1Q9UPQ0 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC19.73■□□□□ 0.75
LIMCH1Q9UPQ0 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC19.73■□□□□ 0.75
LIMCH1Q9UPQ0 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC19.73■□□□□ 0.75
LIMCH1Q9UPQ0 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC19.73■□□□□ 0.75
LIMCH1Q9UPQ0 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC19.73■□□□□ 0.75
LIMCH1Q9UPQ0 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC19.73■□□□□ 0.75
LIMCH1Q9UPQ0 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIMCH1Q9UPQ0 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC19.73■□□□□ 0.75
LIMCH1Q9UPQ0 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
LIMCH1Q9UPQ0 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIMCH1Q9UPQ0 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC19.73■□□□□ 0.75
LIMCH1Q9UPQ0 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIMCH1Q9UPQ0 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIMCH1Q9UPQ0 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIMCH1Q9UPQ0 AL353732.1-201ENST00000569618 1459 ntBASIC19.73■□□□□ 0.75
LIMCH1Q9UPQ0 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LIMCH1Q9UPQ0 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 CYP2A7P1-201ENST00000595391 815 ntBASIC19.72■□□□□ 0.75
LIMCH1Q9UPQ0 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms