Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC17.24■□□□□ 0.35
CDX2Q99626 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC17.24■□□□□ 0.35
CDX2Q99626 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC17.24■□□□□ 0.35
CDX2Q99626 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC17.24■□□□□ 0.35
CDX2Q99626 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDX2Q99626 AC005702.4-201ENST00000618393 416 ntBASIC17.24■□□□□ 0.35
CDX2Q99626 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.24■□□□□ 0.35
CDX2Q99626 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDX2Q99626 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CDX2Q99626 HNRNPA1P48-201ENST00000562726 1377 ntBASIC17.24■□□□□ 0.35
CDX2Q99626 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.24■□□□□ 0.35
CDX2Q99626 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CDX2Q99626 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDX2Q99626 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
CDX2Q99626 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CDX2Q99626 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDX2Q99626 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDX2Q99626 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
CDX2Q99626 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDX2Q99626 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CDX2Q99626 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
CDX2Q99626 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CDX2Q99626 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDX2Q99626 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.23■□□□□ 0.35
CDX2Q99626 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC17.23■□□□□ 0.35
CDX2Q99626 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC17.23■□□□□ 0.35
CDX2Q99626 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC17.23■□□□□ 0.35
CDX2Q99626 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CDX2Q99626 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDX2Q99626 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CDX2Q99626 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDX2Q99626 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDX2Q99626 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDX2Q99626 REEP1-202ENST00000453231 940 ntTSL 2 BASIC17.23■□□□□ 0.35
CDX2Q99626 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CDX2Q99626 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC17.23■□□□□ 0.35
CDX2Q99626 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CDX2Q99626 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC17.23■□□□□ 0.35
CDX2Q99626 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC17.23■□□□□ 0.35
CDX2Q99626 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CDX2Q99626 AC036164.1-201ENST00000570544 333 ntBASIC17.23■□□□□ 0.35
CDX2Q99626 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC17.23■□□□□ 0.35
CDX2Q99626 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC17.23■□□□□ 0.35
CDX2Q99626 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDX2Q99626 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC17.23■□□□□ 0.35
CDX2Q99626 AC244669.2-201ENST00000612320 853 ntBASIC17.23■□□□□ 0.35
CDX2Q99626 HADH-212ENST00000638621 741 ntTSL 5 BASIC17.23■□□□□ 0.35
CDX2Q99626 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDX2Q99626 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.23■□□□□ 0.35
CDX2Q99626 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC17.23■□□□□ 0.35
CDX2Q99626 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDX2Q99626 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CDX2Q99626 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDX2Q99626 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.23■□□□□ 0.35
CDX2Q99626 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CDX2Q99626 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CDX2Q99626 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.22■□□□□ 0.35
CDX2Q99626 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.22■□□□□ 0.35
CDX2Q99626 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDX2Q99626 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDX2Q99626 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDX2Q99626 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDX2Q99626 RPS3-201ENST00000278572 907 ntTSL 3 BASIC17.22■□□□□ 0.35
CDX2Q99626 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDX2Q99626 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDX2Q99626 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDX2Q99626 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC17.22■□□□□ 0.35
CDX2Q99626 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
CDX2Q99626 BX284668.4-201ENST00000453917 508 ntBASIC17.22■□□□□ 0.35
CDX2Q99626 HIST2H2BC-201ENST00000498492 580 ntBASIC17.22■□□□□ 0.35
CDX2Q99626 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC17.22■□□□□ 0.35
CDX2Q99626 ENPP7P5-201ENST00000541031 1031 ntBASIC17.22■□□□□ 0.35
CDX2Q99626 CHMP4BP1-201ENST00000556017 588 ntBASIC17.22■□□□□ 0.35
CDX2Q99626 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC17.22■□□□□ 0.35
CDX2Q99626 KC6-205ENST00000599934 556 ntTSL 4 BASIC17.22■□□□□ 0.35
CDX2Q99626 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC17.22■□□□□ 0.35
CDX2Q99626 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC17.22■□□□□ 0.35
CDX2Q99626 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC17.22■□□□□ 0.35
CDX2Q99626 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC17.22■□□□□ 0.35
CDX2Q99626 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC17.22■□□□□ 0.35
CDX2Q99626 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDX2Q99626 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDX2Q99626 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
CDX2Q99626 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
CDX2Q99626 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDX2Q99626 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.22■□□□□ 0.35
CDX2Q99626 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
CDX2Q99626 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDX2Q99626 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CDX2Q99626 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
CDX2Q99626 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.21■□□□□ 0.35
CDX2Q99626 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDX2Q99626 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDX2Q99626 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17.21■□□□□ 0.35
CDX2Q99626 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC17.21■□□□□ 0.35
CDX2Q99626 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.21■□□□□ 0.35
CDX2Q99626 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC17.21■□□□□ 0.35
CDX2Q99626 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDX2Q99626 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDX2Q99626 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms