Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PTCHD1Q96NR3 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PTCHD1Q96NR3 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PTCHD1Q96NR3 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PTCHD1Q96NR3 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PTCHD1Q96NR3 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PTCHD1Q96NR3 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PTCHD1Q96NR3 FALEC-201ENST00000416894 566 ntTSL 3 BASIC15.81■□□□□ 0.12
PTCHD1Q96NR3 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC15.81■□□□□ 0.12
PTCHD1Q96NR3 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC15.81■□□□□ 0.12
PTCHD1Q96NR3 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PTCHD1Q96NR3 SLC22A20-204ENST00000530038 1673 ntBASIC15.81■□□□□ 0.12
PTCHD1Q96NR3 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PTCHD1Q96NR3 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC15.81■□□□□ 0.12
PTCHD1Q96NR3 AC087641.1-201ENST00000557561 1021 ntBASIC15.81■□□□□ 0.12
PTCHD1Q96NR3 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC15.81■□□□□ 0.12
PTCHD1Q96NR3 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
PTCHD1Q96NR3 AC010327.4-202ENST00000591484 748 ntBASIC15.81■□□□□ 0.12
PTCHD1Q96NR3 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC15.81■□□□□ 0.12
PTCHD1Q96NR3 WT1-AS_2.1-201ENST00000613208 137 ntBASIC15.81■□□□□ 0.12
PTCHD1Q96NR3 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
PTCHD1Q96NR3 HOTTIP_1.1-201ENST00000620415 57 ntBASIC15.81■□□□□ 0.12
PTCHD1Q96NR3 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PTCHD1Q96NR3 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PTCHD1Q96NR3 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PTCHD1Q96NR3 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC15.81■□□□□ 0.12
PTCHD1Q96NR3 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PTCHD1Q96NR3 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 RPL28-209ENST00000560055 670 ntTSL 3 BASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 AC068137.2-201ENST00000605408 478 ntBASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC15.8■□□□□ 0.12
PTCHD1Q96NR3 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
PTCHD1Q96NR3 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTCHD1Q96NR3 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTCHD1Q96NR3 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC15.79■□□□□ 0.12
PTCHD1Q96NR3 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC15.79■□□□□ 0.12
PTCHD1Q96NR3 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PTCHD1Q96NR3 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
PTCHD1Q96NR3 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTCHD1Q96NR3 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PTCHD1Q96NR3 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC15.79■□□□□ 0.12
PTCHD1Q96NR3 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTCHD1Q96NR3 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
PTCHD1Q96NR3 HMGA1P7-201ENST00000406908 502 ntBASIC15.79■□□□□ 0.12
PTCHD1Q96NR3 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC15.79■□□□□ 0.12
PTCHD1Q96NR3 UPF3AP3-201ENST00000420996 769 ntBASIC15.79■□□□□ 0.12
PTCHD1Q96NR3 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC15.79■□□□□ 0.12
PTCHD1Q96NR3 AC112482.1-201ENST00000492080 688 ntBASIC15.79■□□□□ 0.12
PTCHD1Q96NR3 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC15.79■□□□□ 0.12
PTCHD1Q96NR3 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC15.79■□□□□ 0.12
PTCHD1Q96NR3 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC15.79■□□□□ 0.12
PTCHD1Q96NR3 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC15.79■□□□□ 0.12
PTCHD1Q96NR3 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTCHD1Q96NR3 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
PTCHD1Q96NR3 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTCHD1Q96NR3 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTCHD1Q96NR3 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTCHD1Q96NR3 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTCHD1Q96NR3 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTCHD1Q96NR3 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
PTCHD1Q96NR3 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms