Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
LRCH3Q96II8 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LRCH3Q96II8 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
LRCH3Q96II8 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC18.05■□□□□ 0.48
LRCH3Q96II8 AC009949.1-201ENST00000623048 1830 ntBASIC18.05■□□□□ 0.48
LRCH3Q96II8 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LRCH3Q96II8 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LRCH3Q96II8 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC18.04■□□□□ 0.48
LRCH3Q96II8 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LRCH3Q96II8 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LRCH3Q96II8 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
LRCH3Q96II8 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC18.04■□□□□ 0.48
LRCH3Q96II8 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.04■□□□□ 0.48
LRCH3Q96II8 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
LRCH3Q96II8 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LRCH3Q96II8 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.04■□□□□ 0.48
LRCH3Q96II8 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LRCH3Q96II8 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LRCH3Q96II8 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC18.04■□□□□ 0.48
LRCH3Q96II8 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LRCH3Q96II8 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
LRCH3Q96II8 AC099336.1-201ENST00000417053 1171 ntBASIC18.04■□□□□ 0.48
LRCH3Q96II8 AC098850.1-201ENST00000419919 790 ntBASIC18.04■□□□□ 0.48
LRCH3Q96II8 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC18.04■□□□□ 0.48
LRCH3Q96II8 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LRCH3Q96II8 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC18.04■□□□□ 0.48
LRCH3Q96II8 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC18.04■□□□□ 0.48
LRCH3Q96II8 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
LRCH3Q96II8 AC123567.1-201ENST00000548294 1261 ntBASIC18.04■□□□□ 0.48
LRCH3Q96II8 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC18.04■□□□□ 0.48
LRCH3Q96II8 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
LRCH3Q96II8 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC18.04■□□□□ 0.48
LRCH3Q96II8 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC18.04■□□□□ 0.48
LRCH3Q96II8 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.04■□□□□ 0.48
LRCH3Q96II8 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
LRCH3Q96II8 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LRCH3Q96II8 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LRCH3Q96II8 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.04■□□□□ 0.48
LRCH3Q96II8 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LRCH3Q96II8 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
LRCH3Q96II8 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
LRCH3Q96II8 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
LRCH3Q96II8 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC18.04■□□□□ 0.48
LRCH3Q96II8 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LRCH3Q96II8 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.03■□□□□ 0.48
LRCH3Q96II8 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LRCH3Q96II8 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.03■□□□□ 0.48
LRCH3Q96II8 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.03■□□□□ 0.48
LRCH3Q96II8 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LRCH3Q96II8 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC18.03■□□□□ 0.48
LRCH3Q96II8 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LRCH3Q96II8 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LRCH3Q96II8 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC18.03■□□□□ 0.48
LRCH3Q96II8 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LRCH3Q96II8 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
LRCH3Q96II8 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LRCH3Q96II8 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC18.03■□□□□ 0.48
LRCH3Q96II8 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC18.03■□□□□ 0.48
LRCH3Q96II8 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC18.03■□□□□ 0.48
LRCH3Q96II8 MPRIPP1-201ENST00000452433 1089 ntBASIC18.03■□□□□ 0.48
LRCH3Q96II8 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC18.03■□□□□ 0.48
LRCH3Q96II8 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LRCH3Q96II8 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC18.03■□□□□ 0.48
LRCH3Q96II8 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC18.03■□□□□ 0.48
LRCH3Q96II8 RN7SL828P-201ENST00000607615 303 ntBASIC18.03■□□□□ 0.48
LRCH3Q96II8 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC18.03■□□□□ 0.48
LRCH3Q96II8 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LRCH3Q96II8 WFDC1-204ENST00000613603 549 ntBASIC18.03■□□□□ 0.48
LRCH3Q96II8 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.03■□□□□ 0.48
LRCH3Q96II8 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC18.03■□□□□ 0.48
LRCH3Q96II8 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LRCH3Q96II8 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LRCH3Q96II8 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LRCH3Q96II8 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.03■□□□□ 0.48
LRCH3Q96II8 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC18.03■□□□□ 0.48
LRCH3Q96II8 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC18.03■□□□□ 0.48
LRCH3Q96II8 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LRCH3Q96II8 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LRCH3Q96II8 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LRCH3Q96II8 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.03■□□□□ 0.48
LRCH3Q96II8 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
LRCH3Q96II8 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.02■□□□□ 0.48
LRCH3Q96II8 AC073592.3-201ENST00000625118 1834 ntBASIC18.02■□□□□ 0.48
LRCH3Q96II8 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
LRCH3Q96II8 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.02■□□□□ 0.48
LRCH3Q96II8 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LRCH3Q96II8 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LRCH3Q96II8 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC18.02■□□□□ 0.48
LRCH3Q96II8 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.48
LRCH3Q96II8 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.48
LRCH3Q96II8 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LRCH3Q96II8 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC18.02■□□□□ 0.48
LRCH3Q96II8 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
LRCH3Q96II8 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.02■□□□□ 0.48
LRCH3Q96II8 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
LRCH3Q96II8 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
LRCH3Q96II8 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.48
LRCH3Q96II8 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
LRCH3Q96II8 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.48
LRCH3Q96II8 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms