Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 AC079781.4-201ENST00000641908 219 ntBASIC16.71■□□□□ 0.27
ECHDC3Q96DC8 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ECHDC3Q96DC8 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.71■□□□□ 0.27
ECHDC3Q96DC8 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.71■□□□□ 0.27
ECHDC3Q96DC8 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC16.71■□□□□ 0.27
ECHDC3Q96DC8 HLA-A-202ENST00000376806 1854 ntBASIC16.71■□□□□ 0.27
ECHDC3Q96DC8 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
ECHDC3Q96DC8 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.71■□□□□ 0.27
ECHDC3Q96DC8 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
ECHDC3Q96DC8 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC16.71■□□□□ 0.26
ECHDC3Q96DC8 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC16.71■□□□□ 0.26
ECHDC3Q96DC8 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
ECHDC3Q96DC8 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 AD000864.1-201ENST00000624076 2295 ntBASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 SPDYE11-202ENST00000450699 704 ntBASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 AC079140.1-201ENST00000508039 487 ntBASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 SPDYE9P-201ENST00000570642 692 ntBASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 SPDYE10P-202ENST00000612005 668 ntBASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 SPDYE8P-202ENST00000612377 668 ntBASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 BSG-215ENST00000618006 1329 ntTSL 2 BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
ECHDC3Q96DC8 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 TIMM8BP1-201ENST00000452384 211 ntBASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 LINC01225-203ENST00000563550 1244 ntBASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 METTL23-205ENST00000588302 925 ntTSL 5 BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.69■□□□□ 0.26
ECHDC3Q96DC8 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms