Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 AL033527.5-202ENST00000641632 1098 ntBASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SMC1BQ8NDV3 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SMC1BQ8NDV3 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
SMC1BQ8NDV3 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC19.7■□□□□ 0.74
SMC1BQ8NDV3 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SMC1BQ8NDV3 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SMC1BQ8NDV3 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SMC1BQ8NDV3 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC19.7■□□□□ 0.74
SMC1BQ8NDV3 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
SMC1BQ8NDV3 STARD13-205ENST00000439831 945 ntTSL 2 BASIC19.7■□□□□ 0.74
SMC1BQ8NDV3 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC19.7■□□□□ 0.74
SMC1BQ8NDV3 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC19.7■□□□□ 0.74
SMC1BQ8NDV3 AC104596.2-201ENST00000512793 793 ntBASIC19.7■□□□□ 0.74
SMC1BQ8NDV3 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC19.7■□□□□ 0.74
SMC1BQ8NDV3 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC19.7■□□□□ 0.74
SMC1BQ8NDV3 PAM16-204ENST00000571941 674 ntTSL 3 BASIC19.7■□□□□ 0.74
SMC1BQ8NDV3 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC19.7■□□□□ 0.74
SMC1BQ8NDV3 AC016629.1-201ENST00000596579 586 ntBASIC19.7■□□□□ 0.74
SMC1BQ8NDV3 AL022328.1-201ENST00000610050 478 ntBASIC19.7■□□□□ 0.74
SMC1BQ8NDV3 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
SMC1BQ8NDV3 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.7■□□□□ 0.74
SMC1BQ8NDV3 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
SMC1BQ8NDV3 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SMC1BQ8NDV3 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SMC1BQ8NDV3 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 CDC14C-201ENST00000428251 1719 ntBASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 USB1-202ENST00000423271 1217 ntTSL 2 BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 CALR4P-201ENST00000431943 946 ntBASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 AC098859.1-201ENST00000502915 1238 ntBASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 RPSAP52-203ENST00000622976 1023 ntBASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
SMC1BQ8NDV3 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 CLK3P2-201ENST00000427566 1453 ntBASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms