Protein–RNA interactions for Protein: Q8N196

SIX5, Homeobox protein SIX5, humanhuman

Predictions only

Length 739 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX5Q8N196 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
SIX5Q8N196 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SIX5Q8N196 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.14■□□□□ 0.33
SIX5Q8N196 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.14■□□□□ 0.33
SIX5Q8N196 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SIX5Q8N196 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SIX5Q8N196 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
SIX5Q8N196 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.14■□□□□ 0.33
SIX5Q8N196 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.14■□□□□ 0.33
SIX5Q8N196 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
SIX5Q8N196 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
SIX5Q8N196 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SIX5Q8N196 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.14■□□□□ 0.33
SIX5Q8N196 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SIX5Q8N196 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SIX5Q8N196 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
SIX5Q8N196 AC068418.2-201ENST00000577309 3703 ntBASIC17.13■□□□□ 0.33
SIX5Q8N196 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
SIX5Q8N196 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
SIX5Q8N196 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SIX5Q8N196 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SIX5Q8N196 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SIX5Q8N196 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SIX5Q8N196 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SIX5Q8N196 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SIX5Q8N196 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.13■□□□□ 0.33
SIX5Q8N196 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
SIX5Q8N196 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SIX5Q8N196 AC142381.1-201ENST00000426099 345 ntBASIC17.13■□□□□ 0.33
SIX5Q8N196 RPS2P32-201ENST00000439199 892 ntBASIC17.13■□□□□ 0.33
SIX5Q8N196 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SIX5Q8N196 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
SIX5Q8N196 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC17.13■□□□□ 0.33
SIX5Q8N196 MIR3909-201ENST00000579518 119 ntBASIC17.13■□□□□ 0.33
SIX5Q8N196 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SIX5Q8N196 IGHV3-72-202ENST00000621503 303 ntBASIC17.13■□□□□ 0.33
SIX5Q8N196 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC17.13■□□□□ 0.33
SIX5Q8N196 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SIX5Q8N196 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SIX5Q8N196 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SIX5Q8N196 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
SIX5Q8N196 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SIX5Q8N196 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SIX5Q8N196 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
SIX5Q8N196 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
SIX5Q8N196 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
SIX5Q8N196 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SIX5Q8N196 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.13■□□□□ 0.33
SIX5Q8N196 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
SIX5Q8N196 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SIX5Q8N196 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
SIX5Q8N196 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.12■□□□□ 0.33
SIX5Q8N196 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.12■□□□□ 0.33
SIX5Q8N196 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SIX5Q8N196 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
SIX5Q8N196 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SIX5Q8N196 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SIX5Q8N196 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SIX5Q8N196 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SIX5Q8N196 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SIX5Q8N196 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SIX5Q8N196 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SIX5Q8N196 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SIX5Q8N196 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SIX5Q8N196 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SIX5Q8N196 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
SIX5Q8N196 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SIX5Q8N196 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SIX5Q8N196 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC17.12■□□□□ 0.33
SIX5Q8N196 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC17.12■□□□□ 0.33
SIX5Q8N196 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
SIX5Q8N196 AC245100.3-201ENST00000441281 285 ntBASIC17.12■□□□□ 0.33
SIX5Q8N196 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
SIX5Q8N196 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SIX5Q8N196 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC17.12■□□□□ 0.33
SIX5Q8N196 AC009407.1-201ENST00000568958 598 ntBASIC17.12■□□□□ 0.33
SIX5Q8N196 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC17.12■□□□□ 0.33
SIX5Q8N196 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC17.12■□□□□ 0.33
SIX5Q8N196 RAB34-223ENST00000636154 730 ntTSL 2 BASIC17.12■□□□□ 0.33
SIX5Q8N196 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC17.12■□□□□ 0.33
SIX5Q8N196 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
SIX5Q8N196 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
SIX5Q8N196 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SIX5Q8N196 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
SIX5Q8N196 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
SIX5Q8N196 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
SIX5Q8N196 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
SIX5Q8N196 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.12■□□□□ 0.33
SIX5Q8N196 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SIX5Q8N196 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SIX5Q8N196 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SIX5Q8N196 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
SIX5Q8N196 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SIX5Q8N196 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.12■□□□□ 0.33
SIX5Q8N196 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SIX5Q8N196 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
SIX5Q8N196 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SIX5Q8N196 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SIX5Q8N196 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SIX5Q8N196 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms