Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 AC016027.1-202ENST00000607927 1699 ntBASIC10.43□□□□□ -0.74
LINC00643Q86TS7 MKNK1-203ENST00000371945 2618 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 MAD2L1-201ENST00000296509 5468 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 MROH4P-201ENST00000431302 1578 ntBASIC10.43□□□□□ -0.74
LINC00643Q86TS7 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 AL031595.1-201ENST00000623969 4709 ntBASIC10.43□□□□□ -0.74
LINC00643Q86TS7 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 ERAP1-201ENST00000296754 5495 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 ARHGEF33-202ENST00000409978 4484 ntAPPRIS P1 TSL 5 BASIC10.43□□□□□ -0.74
LINC00643Q86TS7 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 AC112504.1-201ENST00000623415 1841 ntBASIC10.42□□□□□ -0.74
LINC00643Q86TS7 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 ABLIM2-213ENST00000514025 2974 ntTSL 2 BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 CES1P1-201ENST00000421606 1704 ntBASIC10.42□□□□□ -0.74
LINC00643Q86TS7 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 DKFZP434H168-201ENST00000567381 1905 ntBASIC10.42□□□□□ -0.74
LINC00643Q86TS7 HNF1B-204ENST00000617811 2977 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 SFI1-229ENST00000540643 4226 ntAPPRIS ALT2 TSL 2 BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 PIK3R3-203ENST00000420542 5174 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 GSN-215ENST00000545652 2428 ntTSL 2 BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC10.42□□□□□ -0.74
LINC00643Q86TS7 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms