Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 FAM197Y3-203ENST00000618346 717 ntBASIC20.23■□□□□ 0.83
VPS53Q5VIR6 AC092865.6-201ENST00000642101 219 ntBASIC20.23■□□□□ 0.83
VPS53Q5VIR6 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
VPS53Q5VIR6 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS53Q5VIR6 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS53Q5VIR6 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS53Q5VIR6 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VPS53Q5VIR6 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC20.23■□□□□ 0.83
VPS53Q5VIR6 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC20.23■□□□□ 0.83
VPS53Q5VIR6 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC20.23■□□□□ 0.83
VPS53Q5VIR6 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS53Q5VIR6 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
VPS53Q5VIR6 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS53Q5VIR6 PC-214ENST00000628663 1470 ntTSL 5 BASIC20.23■□□□□ 0.83
VPS53Q5VIR6 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC20.23■□□□□ 0.83
VPS53Q5VIR6 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC20.23■□□□□ 0.83
VPS53Q5VIR6 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VPS53Q5VIR6 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS53Q5VIR6 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS53Q5VIR6 AL021920.2-201ENST00000624828 1351 ntBASIC20.22■□□□□ 0.83
VPS53Q5VIR6 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS53Q5VIR6 AC092171.3-201ENST00000610122 2651 ntBASIC20.22■□□□□ 0.83
VPS53Q5VIR6 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
VPS53Q5VIR6 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS53Q5VIR6 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS53Q5VIR6 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC20.22■□□□□ 0.83
VPS53Q5VIR6 RHOQP3-201ENST00000437982 621 ntBASIC20.22■□□□□ 0.83
VPS53Q5VIR6 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS53Q5VIR6 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC20.22■□□□□ 0.83
VPS53Q5VIR6 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC20.22■□□□□ 0.83
VPS53Q5VIR6 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS53Q5VIR6 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS53Q5VIR6 AL513190.1-201ENST00000621254 727 ntBASIC20.22■□□□□ 0.83
VPS53Q5VIR6 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC20.22■□□□□ 0.83
VPS53Q5VIR6 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VPS53Q5VIR6 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
VPS53Q5VIR6 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC20.22■□□□□ 0.83
VPS53Q5VIR6 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VPS53Q5VIR6 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC20.22■□□□□ 0.83
VPS53Q5VIR6 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC20.22■□□□□ 0.83
VPS53Q5VIR6 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS53Q5VIR6 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC20.22■□□□□ 0.83
VPS53Q5VIR6 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
VPS53Q5VIR6 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
VPS53Q5VIR6 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 UBALD1-205ENST00000590891 2641 ntBASIC20.21■□□□□ 0.83
VPS53Q5VIR6 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 NMU-202ENST00000505262 693 ntTSL 3 BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 KRT18P58-201ENST00000527480 1120 ntBASIC20.21■□□□□ 0.83
VPS53Q5VIR6 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 AC096734.2-201ENST00000562054 433 ntBASIC20.21■□□□□ 0.83
VPS53Q5VIR6 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 MPDU1-223ENST00000582151 728 ntBASIC20.21■□□□□ 0.83
VPS53Q5VIR6 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 PC-204ENST00000524491 1714 ntTSL 2 BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 PCDHB19P-201ENST00000570871 2371 ntBASIC20.21■□□□□ 0.83
VPS53Q5VIR6 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC20.21■□□□□ 0.83
VPS53Q5VIR6 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 AL603756.1-201ENST00000606511 2163 ntBASIC20.2■□□□□ 0.82
VPS53Q5VIR6 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
VPS53Q5VIR6 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 62.1 ms