Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
USP39Q53GS9 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP39Q53GS9 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP39Q53GS9 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP39Q53GS9 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP39Q53GS9 CENPM-205ENST00000404067 905 ntTSL 3 BASIC17.04■□□□□ 0.32
USP39Q53GS9 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC17.04■□□□□ 0.32
USP39Q53GS9 SPDYE7P-202ENST00000420373 878 ntBASIC17.04■□□□□ 0.32
USP39Q53GS9 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP39Q53GS9 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC17.04■□□□□ 0.32
USP39Q53GS9 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP39Q53GS9 TSPY16P-201ENST00000449843 468 ntBASIC17.04■□□□□ 0.32
USP39Q53GS9 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP39Q53GS9 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC17.04■□□□□ 0.32
USP39Q53GS9 AC107918.2-201ENST00000530817 355 ntBASIC17.04■□□□□ 0.32
USP39Q53GS9 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
USP39Q53GS9 POLD4-211ENST00000539074 714 ntTSL 3 BASIC17.04■□□□□ 0.32
USP39Q53GS9 KRT8P23-201ENST00000560090 1207 ntBASIC17.04■□□□□ 0.32
USP39Q53GS9 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC17.04■□□□□ 0.32
USP39Q53GS9 AL035252.4-201ENST00000624174 288 ntBASIC17.04■□□□□ 0.32
USP39Q53GS9 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC17.04■□□□□ 0.32
USP39Q53GS9 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USP39Q53GS9 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
USP39Q53GS9 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.04■□□□□ 0.32
USP39Q53GS9 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.04■□□□□ 0.32
USP39Q53GS9 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP39Q53GS9 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP39Q53GS9 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
USP39Q53GS9 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USP39Q53GS9 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
USP39Q53GS9 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP39Q53GS9 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP39Q53GS9 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
USP39Q53GS9 AC009053.2-201ENST00000563701 2365 ntBASIC17.03■□□□□ 0.32
USP39Q53GS9 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
USP39Q53GS9 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC17.03■□□□□ 0.32
USP39Q53GS9 PCDHA12-202ENST00000613593 2588 ntBASIC17.03■□□□□ 0.32
USP39Q53GS9 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP39Q53GS9 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
USP39Q53GS9 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP39Q53GS9 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
USP39Q53GS9 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
USP39Q53GS9 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP39Q53GS9 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP39Q53GS9 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC17.03■□□□□ 0.32
USP39Q53GS9 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.03■□□□□ 0.32
USP39Q53GS9 UXT-AS1-201ENST00000590504 1525 ntBASIC17.03■□□□□ 0.32
USP39Q53GS9 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC17.03■□□□□ 0.32
USP39Q53GS9 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.03■□□□□ 0.32
USP39Q53GS9 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP39Q53GS9 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
USP39Q53GS9 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP39Q53GS9 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP39Q53GS9 COPE-202ENST00000349893 948 ntTSL 2 BASIC17.03■□□□□ 0.32
USP39Q53GS9 BAD-202ENST00000394531 631 ntTSL 3 BASIC17.03■□□□□ 0.32
USP39Q53GS9 AC236430.1-201ENST00000402231 743 ntBASIC17.03■□□□□ 0.32
USP39Q53GS9 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC17.03■□□□□ 0.32
USP39Q53GS9 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
USP39Q53GS9 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC17.03■□□□□ 0.32
USP39Q53GS9 RBM7-207ENST00000544582 692 ntTSL 3 BASIC17.03■□□□□ 0.32
USP39Q53GS9 BAD-207ENST00000544785 525 ntTSL 3 BASIC17.03■□□□□ 0.32
USP39Q53GS9 AC005412.3-201ENST00000580309 715 ntBASIC17.03■□□□□ 0.32
USP39Q53GS9 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.03■□□□□ 0.32
USP39Q53GS9 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC17.03■□□□□ 0.32
USP39Q53GS9 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP39Q53GS9 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
USP39Q53GS9 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP39Q53GS9 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP39Q53GS9 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
USP39Q53GS9 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP39Q53GS9 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.03■□□□□ 0.32
USP39Q53GS9 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
USP39Q53GS9 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
USP39Q53GS9 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP39Q53GS9 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC17.02■□□□□ 0.32
USP39Q53GS9 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
USP39Q53GS9 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
USP39Q53GS9 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
USP39Q53GS9 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC17.02■□□□□ 0.32
USP39Q53GS9 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
USP39Q53GS9 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
USP39Q53GS9 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
USP39Q53GS9 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
USP39Q53GS9 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC17.02■□□□□ 0.32
USP39Q53GS9 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
USP39Q53GS9 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
USP39Q53GS9 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
USP39Q53GS9 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
USP39Q53GS9 EDF1-203ENST00000371649 790 ntTSL 2 BASIC17.02■□□□□ 0.32
USP39Q53GS9 METTL26-204ENST00000397665 558 ntTSL 2 BASIC17.02■□□□□ 0.32
USP39Q53GS9 SPCS2P4-201ENST00000436160 681 ntBASIC17.02■□□□□ 0.32
USP39Q53GS9 AC002472.2-201ENST00000442739 958 ntBASIC17.02■□□□□ 0.32
USP39Q53GS9 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
USP39Q53GS9 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC17.02■□□□□ 0.32
USP39Q53GS9 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC17.02■□□□□ 0.32
USP39Q53GS9 IGHV3-42-201ENST00000520410 361 ntBASIC17.02■□□□□ 0.32
USP39Q53GS9 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC17.02■□□□□ 0.32
USP39Q53GS9 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC17.02■□□□□ 0.32
USP39Q53GS9 MMP17-203ENST00000535004 719 ntTSL 3 BASIC17.02■□□□□ 0.32
USP39Q53GS9 AC140878.1-201ENST00000565277 250 ntBASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms