Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.77■□□□□ 0.44
USP41Q3LFD5 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
USP41Q3LFD5 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC17.77■□□□□ 0.44
USP41Q3LFD5 CD81-202ENST00000381036 880 ntTSL 3 BASIC17.77■□□□□ 0.44
USP41Q3LFD5 HNRNPA1P40-201ENST00000426371 1278 ntBASIC17.77■□□□□ 0.44
USP41Q3LFD5 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC17.77■□□□□ 0.44
USP41Q3LFD5 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
USP41Q3LFD5 IGHV3-42-201ENST00000520410 361 ntBASIC17.77■□□□□ 0.44
USP41Q3LFD5 AC105233.2-201ENST00000523697 349 ntBASIC17.77■□□□□ 0.44
USP41Q3LFD5 AC069120.2-201ENST00000524091 540 ntBASIC17.77■□□□□ 0.44
USP41Q3LFD5 AF228730.5-201ENST00000530288 346 ntBASIC17.77■□□□□ 0.44
USP41Q3LFD5 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
USP41Q3LFD5 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
USP41Q3LFD5 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC17.77■□□□□ 0.44
USP41Q3LFD5 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC17.77■□□□□ 0.44
USP41Q3LFD5 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.77■□□□□ 0.44
USP41Q3LFD5 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
USP41Q3LFD5 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
USP41Q3LFD5 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
USP41Q3LFD5 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
USP41Q3LFD5 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
USP41Q3LFD5 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.76■□□□□ 0.43
USP41Q3LFD5 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
USP41Q3LFD5 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP41Q3LFD5 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC17.76■□□□□ 0.43
USP41Q3LFD5 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC17.76■□□□□ 0.43
USP41Q3LFD5 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP41Q3LFD5 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
USP41Q3LFD5 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
USP41Q3LFD5 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC17.76■□□□□ 0.43
USP41Q3LFD5 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
USP41Q3LFD5 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP41Q3LFD5 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP41Q3LFD5 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP41Q3LFD5 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP41Q3LFD5 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP41Q3LFD5 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP41Q3LFD5 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.76■□□□□ 0.43
USP41Q3LFD5 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC17.76■□□□□ 0.43
USP41Q3LFD5 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
USP41Q3LFD5 PPP6R2P1-201ENST00000450880 1275 ntBASIC17.76■□□□□ 0.43
USP41Q3LFD5 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
USP41Q3LFD5 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC17.76■□□□□ 0.43
USP41Q3LFD5 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC17.76■□□□□ 0.43
USP41Q3LFD5 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC17.76■□□□□ 0.43
USP41Q3LFD5 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC17.76■□□□□ 0.43
USP41Q3LFD5 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC17.76■□□□□ 0.43
USP41Q3LFD5 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
USP41Q3LFD5 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP41Q3LFD5 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP41Q3LFD5 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP41Q3LFD5 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
USP41Q3LFD5 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP41Q3LFD5 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP41Q3LFD5 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
USP41Q3LFD5 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
USP41Q3LFD5 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP41Q3LFD5 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP41Q3LFD5 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.76■□□□□ 0.43
USP41Q3LFD5 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
USP41Q3LFD5 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP41Q3LFD5 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USP41Q3LFD5 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USP41Q3LFD5 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USP41Q3LFD5 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP41Q3LFD5 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USP41Q3LFD5 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC17.75■□□□□ 0.43
USP41Q3LFD5 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP41Q3LFD5 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USP41Q3LFD5 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
USP41Q3LFD5 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.75■□□□□ 0.43
USP41Q3LFD5 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
USP41Q3LFD5 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
USP41Q3LFD5 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.75■□□□□ 0.43
USP41Q3LFD5 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USP41Q3LFD5 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
USP41Q3LFD5 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP41Q3LFD5 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP41Q3LFD5 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP41Q3LFD5 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP41Q3LFD5 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP41Q3LFD5 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
USP41Q3LFD5 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP41Q3LFD5 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP41Q3LFD5 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USP41Q3LFD5 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC17.75■□□□□ 0.43
USP41Q3LFD5 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC17.75■□□□□ 0.43
USP41Q3LFD5 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC17.75■□□□□ 0.43
USP41Q3LFD5 WDR53-204ENST00000433160 887 ntTSL 5 BASIC17.75■□□□□ 0.43
USP41Q3LFD5 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC17.75■□□□□ 0.43
USP41Q3LFD5 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC17.75■□□□□ 0.43
USP41Q3LFD5 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USP41Q3LFD5 MIR4453-201ENST00000584019 89 ntBASIC17.75■□□□□ 0.43
USP41Q3LFD5 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USP41Q3LFD5 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC17.75■□□□□ 0.43
USP41Q3LFD5 AL390754.1-201ENST00000619088 582 ntBASIC17.75■□□□□ 0.43
USP41Q3LFD5 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.75■□□□□ 0.43
USP41Q3LFD5 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP41Q3LFD5 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP41Q3LFD5 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms