Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 GPAA1P2-201ENST00000417923 928 ntBASIC17.45■□□□□ 0.38
CHD9Q3L8U1 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 AP000812.2-201ENST00000538934 718 ntBASIC17.45■□□□□ 0.38
CHD9Q3L8U1 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC17.45■□□□□ 0.38
CHD9Q3L8U1 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 AL021920.2-201ENST00000624828 1351 ntBASIC17.45■□□□□ 0.38
CHD9Q3L8U1 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 COG4-212ENST00000564653 590 ntTSL 5 BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 RN7SL219P-201ENST00000582872 296 ntBASIC17.45■□□□□ 0.38
CHD9Q3L8U1 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 APRT-204ENST00000563655 709 ntTSL 5 BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 AC233724.13-201ENST00000598383 410 ntBASIC17.44■□□□□ 0.38
CHD9Q3L8U1 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 HNRNPA1P48-201ENST00000562726 1377 ntBASIC17.44■□□□□ 0.38
CHD9Q3L8U1 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CHD9Q3L8U1 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CHD9Q3L8U1 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHD9Q3L8U1 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHD9Q3L8U1 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC17.43■□□□□ 0.38
CHD9Q3L8U1 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHD9Q3L8U1 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHD9Q3L8U1 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC17.43■□□□□ 0.38
CHD9Q3L8U1 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC17.43■□□□□ 0.38
CHD9Q3L8U1 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC17.43■□□□□ 0.38
CHD9Q3L8U1 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHD9Q3L8U1 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC17.43■□□□□ 0.38
CHD9Q3L8U1 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CHD9Q3L8U1 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC17.43■□□□□ 0.38
CHD9Q3L8U1 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC17.43■□□□□ 0.38
CHD9Q3L8U1 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC17.43■□□□□ 0.38
CHD9Q3L8U1 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC17.43■□□□□ 0.38
CHD9Q3L8U1 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC17.43■□□□□ 0.38
CHD9Q3L8U1 AC025048.3-201ENST00000590609 569 ntBASIC17.43■□□□□ 0.38
CHD9Q3L8U1 SNX33P1-201ENST00000592116 1762 ntBASIC17.43■□□□□ 0.38
CHD9Q3L8U1 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CHD9Q3L8U1 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHD9Q3L8U1 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms