Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
ABCA4P78363 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC14.39□□□□□ -0.11
ABCA4P78363 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
ABCA4P78363 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
ABCA4P78363 REEP4-207ENST00000523293 913 ntTSL 3 BASIC14.39□□□□□ -0.11
ABCA4P78363 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC14.39□□□□□ -0.11
ABCA4P78363 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC14.39□□□□□ -0.11
ABCA4P78363 NKG7-205ENST00000600427 520 ntTSL 3 BASIC14.39□□□□□ -0.11
ABCA4P78363 AC009118.2-201ENST00000613275 655 ntBASIC14.39□□□□□ -0.11
ABCA4P78363 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
ABCA4P78363 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
ABCA4P78363 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC14.39□□□□□ -0.11
ABCA4P78363 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA4P78363 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA4P78363 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA4P78363 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA4P78363 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA4P78363 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC14.38□□□□□ -0.11
ABCA4P78363 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC14.38□□□□□ -0.11
ABCA4P78363 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC14.38□□□□□ -0.11
ABCA4P78363 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA4P78363 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC14.38□□□□□ -0.11
ABCA4P78363 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA4P78363 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA4P78363 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA4P78363 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA4P78363 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC14.38□□□□□ -0.11
ABCA4P78363 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC14.38□□□□□ -0.11
ABCA4P78363 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC14.38□□□□□ -0.11
ABCA4P78363 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA4P78363 HILS1-202ENST00000545329 423 ntBASIC14.38□□□□□ -0.11
ABCA4P78363 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC14.38□□□□□ -0.11
ABCA4P78363 AC073592.8-201ENST00000624126 511 ntBASIC14.38□□□□□ -0.11
ABCA4P78363 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
ABCA4P78363 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC14.38□□□□□ -0.11
ABCA4P78363 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA4P78363 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA4P78363 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA4P78363 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA4P78363 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA4P78363 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA4P78363 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA4P78363 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
ABCA4P78363 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA4P78363 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA4P78363 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA4P78363 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC14.38□□□□□ -0.11
ABCA4P78363 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
ABCA4P78363 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
ABCA4P78363 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA4P78363 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
ABCA4P78363 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA4P78363 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA4P78363 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC14.38□□□□□ -0.11
ABCA4P78363 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC14.38□□□□□ -0.11
ABCA4P78363 GPR53P-205ENST00000457298 1084 ntBASIC14.38□□□□□ -0.11
ABCA4P78363 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
ABCA4P78363 IGHV3-62-201ENST00000520057 340 ntBASIC14.38□□□□□ -0.11
ABCA4P78363 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC14.38□□□□□ -0.11
ABCA4P78363 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC14.38□□□□□ -0.11
ABCA4P78363 MPI-209ENST00000564003 1195 ntTSL 2 BASIC14.38□□□□□ -0.11
ABCA4P78363 COQ9-214ENST00000567933 882 ntTSL 3 BASIC14.38□□□□□ -0.11
ABCA4P78363 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC14.38□□□□□ -0.11
ABCA4P78363 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA4P78363 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC14.38□□□□□ -0.11
ABCA4P78363 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA4P78363 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA4P78363 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA4P78363 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA4P78363 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA4P78363 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA4P78363 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC14.37□□□□□ -0.11
ABCA4P78363 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA4P78363 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA4P78363 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA4P78363 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC14.37□□□□□ -0.11
ABCA4P78363 OR6D1P-203ENST00000641209 4860 ntBASIC14.37□□□□□ -0.11
ABCA4P78363 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA4P78363 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
ABCA4P78363 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
ABCA4P78363 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA4P78363 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
ABCA4P78363 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA4P78363 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
ABCA4P78363 MIR1909-201ENST00000411312 80 ntBASIC14.37□□□□□ -0.11
ABCA4P78363 AL512638.1-201ENST00000457493 794 ntBASIC14.37□□□□□ -0.11
ABCA4P78363 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA4P78363 SATB1-217ENST00000493952 626 ntTSL 3 BASIC14.37□□□□□ -0.11
ABCA4P78363 AC105233.2-201ENST00000523697 349 ntBASIC14.37□□□□□ -0.11
ABCA4P78363 AF228730.5-201ENST00000530288 346 ntBASIC14.37□□□□□ -0.11
ABCA4P78363 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC14.37□□□□□ -0.11
ABCA4P78363 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
ABCA4P78363 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC14.37□□□□□ -0.11
ABCA4P78363 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC14.37□□□□□ -0.11
ABCA4P78363 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA4P78363 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
ABCA4P78363 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA4P78363 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA4P78363 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA4P78363 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms