Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN4P29074 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN4P29074 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN4P29074 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN4P29074 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.9■□□□□ 0.3
PTPN4P29074 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.9■□□□□ 0.3
PTPN4P29074 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN4P29074 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
PTPN4P29074 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.9■□□□□ 0.3
PTPN4P29074 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.9■□□□□ 0.3
PTPN4P29074 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.9■□□□□ 0.3
PTPN4P29074 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.9■□□□□ 0.3
PTPN4P29074 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN4P29074 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.9■□□□□ 0.3
PTPN4P29074 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.9■□□□□ 0.3
PTPN4P29074 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.9■□□□□ 0.3
PTPN4P29074 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.9■□□□□ 0.3
PTPN4P29074 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC16.9■□□□□ 0.3
PTPN4P29074 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC16.9■□□□□ 0.3
PTPN4P29074 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.9■□□□□ 0.3
PTPN4P29074 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC16.9■□□□□ 0.3
PTPN4P29074 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.9■□□□□ 0.3
PTPN4P29074 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN4P29074 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN4P29074 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN4P29074 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN4P29074 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
PTPN4P29074 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN4P29074 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN4P29074 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.9■□□□□ 0.3
PTPN4P29074 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN4P29074 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN4P29074 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN4P29074 IL9RP2-201ENST00000423948 1312 ntBASIC16.9■□□□□ 0.3
PTPN4P29074 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN4P29074 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN4P29074 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
PTPN4P29074 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN4P29074 AC092384.3-202ENST00000564646 2873 ntBASIC16.9■□□□□ 0.3
PTPN4P29074 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.9■□□□□ 0.3
PTPN4P29074 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC16.9■□□□□ 0.3
PTPN4P29074 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN4P29074 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.9■□□□□ 0.3
PTPN4P29074 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
PTPN4P29074 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
PTPN4P29074 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
PTPN4P29074 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.89■□□□□ 0.3
PTPN4P29074 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.89■□□□□ 0.3
PTPN4P29074 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.89■□□□□ 0.29
PTPN4P29074 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN4P29074 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN4P29074 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.89■□□□□ 0.29
PTPN4P29074 AC125634.1-201ENST00000438758 1403 ntBASIC16.89■□□□□ 0.29
PTPN4P29074 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN4P29074 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
PTPN4P29074 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN4P29074 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN4P29074 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
PTPN4P29074 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN4P29074 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN4P29074 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.89■□□□□ 0.29
PTPN4P29074 AC073648.2-201ENST00000510116 352 ntBASIC16.89■□□□□ 0.29
PTPN4P29074 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN4P29074 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC16.89■□□□□ 0.29
PTPN4P29074 MTDHP3-201ENST00000594186 672 ntBASIC16.89■□□□□ 0.29
PTPN4P29074 AC011467.2-201ENST00000598425 242 ntBASIC16.89■□□□□ 0.29
PTPN4P29074 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC16.89■□□□□ 0.29
PTPN4P29074 AL139327.4-201ENST00000612362 153 ntBASIC16.89■□□□□ 0.29
PTPN4P29074 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.89■□□□□ 0.29
PTPN4P29074 NME4-212ENST00000621774 904 ntTSL 3 BASIC16.89■□□□□ 0.29
PTPN4P29074 AC148477.8-201ENST00000624298 468 ntBASIC16.89■□□□□ 0.29
PTPN4P29074 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.89■□□□□ 0.29
PTPN4P29074 AF228730.7-201ENST00000641842 219 ntBASIC16.89■□□□□ 0.29
PTPN4P29074 INTS4P1-201ENST00000438455 1935 ntBASIC16.89■□□□□ 0.29
PTPN4P29074 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.89■□□□□ 0.29
PTPN4P29074 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN4P29074 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
PTPN4P29074 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN4P29074 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN4P29074 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
PTPN4P29074 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN4P29074 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN4P29074 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN4P29074 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN4P29074 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.88■□□□□ 0.29
PTPN4P29074 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN4P29074 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
PTPN4P29074 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN4P29074 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN4P29074 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.88■□□□□ 0.29
PTPN4P29074 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN4P29074 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN4P29074 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN4P29074 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN4P29074 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC16.88■□□□□ 0.29
PTPN4P29074 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.88■□□□□ 0.29
PTPN4P29074 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.88■□□□□ 0.29
PTPN4P29074 BX276092.7-203ENST00000637198 1536 ntBASIC16.88■□□□□ 0.29
PTPN4P29074 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
PTPN4P29074 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms