Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCA1P28370 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCA1P28370 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCA1P28370 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCA1P28370 LINC01144-201ENST00000626198 1710 ntBASIC19.16■□□□□ 0.66
SMARCA1P28370 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
SMARCA1P28370 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
SMARCA1P28370 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCA1P28370 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCA1P28370 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCA1P28370 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCA1P28370 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC19.15■□□□□ 0.66
SMARCA1P28370 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SMARCA1P28370 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC19.15■□□□□ 0.66
SMARCA1P28370 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC19.15■□□□□ 0.66
SMARCA1P28370 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMARCA1P28370 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMARCA1P28370 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC19.15■□□□□ 0.66
SMARCA1P28370 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMARCA1P28370 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMARCA1P28370 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC19.15■□□□□ 0.66
SMARCA1P28370 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMARCA1P28370 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMARCA1P28370 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC19.15■□□□□ 0.66
SMARCA1P28370 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC19.15■□□□□ 0.66
SMARCA1P28370 TIMM8BP1-201ENST00000452384 211 ntBASIC19.15■□□□□ 0.66
SMARCA1P28370 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC19.15■□□□□ 0.66
SMARCA1P28370 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC19.15■□□□□ 0.66
SMARCA1P28370 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SMARCA1P28370 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SMARCA1P28370 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC19.15■□□□□ 0.66
SMARCA1P28370 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMARCA1P28370 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMARCA1P28370 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMARCA1P28370 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMARCA1P28370 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMARCA1P28370 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SMARCA1P28370 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC19.15■□□□□ 0.66
SMARCA1P28370 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC19.15■□□□□ 0.66
SMARCA1P28370 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SMARCA1P28370 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
SMARCA1P28370 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.66
SMARCA1P28370 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SMARCA1P28370 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
SMARCA1P28370 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMARCA1P28370 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC19.14■□□□□ 0.65
SMARCA1P28370 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMARCA1P28370 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
SMARCA1P28370 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMARCA1P28370 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC19.14■□□□□ 0.65
SMARCA1P28370 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.65
SMARCA1P28370 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMARCA1P28370 CNN2P11-201ENST00000429351 262 ntBASIC19.14■□□□□ 0.65
SMARCA1P28370 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC19.14■□□□□ 0.65
SMARCA1P28370 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMARCA1P28370 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SMARCA1P28370 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC19.14■□□□□ 0.65
SMARCA1P28370 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC19.14■□□□□ 0.65
SMARCA1P28370 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC19.14■□□□□ 0.65
SMARCA1P28370 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC19.14■□□□□ 0.65
SMARCA1P28370 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC19.14■□□□□ 0.65
SMARCA1P28370 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
SMARCA1P28370 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC19.14■□□□□ 0.65
SMARCA1P28370 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC19.14■□□□□ 0.65
SMARCA1P28370 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SMARCA1P28370 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMARCA1P28370 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
SMARCA1P28370 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
SMARCA1P28370 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMARCA1P28370 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC19.14■□□□□ 0.65
SMARCA1P28370 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
SMARCA1P28370 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC19.14■□□□□ 0.65
SMARCA1P28370 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.65
SMARCA1P28370 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMARCA1P28370 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMARCA1P28370 HR-201ENST00000312841 5351 ntTSL 5 BASIC19.13■□□□□ 0.65
SMARCA1P28370 FLJ38576-201ENST00000623820 2459 ntBASIC19.13■□□□□ 0.65
SMARCA1P28370 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMARCA1P28370 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC19.13■□□□□ 0.65
SMARCA1P28370 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMARCA1P28370 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMARCA1P28370 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMARCA1P28370 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMARCA1P28370 PTMS-202ENST00000389462 773 ntTSL 2 BASIC19.13■□□□□ 0.65
SMARCA1P28370 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC19.13■□□□□ 0.65
SMARCA1P28370 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC19.13■□□□□ 0.65
SMARCA1P28370 AL592309.1-201ENST00000443127 649 ntBASIC19.13■□□□□ 0.65
SMARCA1P28370 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC19.13■□□□□ 0.65
SMARCA1P28370 AC105233.2-201ENST00000523697 349 ntBASIC19.13■□□□□ 0.65
SMARCA1P28370 AF228730.5-201ENST00000530288 346 ntBASIC19.13■□□□□ 0.65
SMARCA1P28370 RNF34-208ENST00000555076 593 ntTSL 3 BASIC19.13■□□□□ 0.65
SMARCA1P28370 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMARCA1P28370 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC19.13■□□□□ 0.65
SMARCA1P28370 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC19.13■□□□□ 0.65
SMARCA1P28370 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC19.13■□□□□ 0.65
SMARCA1P28370 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMARCA1P28370 AC027307.2-201ENST00000591252 911 ntBASIC19.13■□□□□ 0.65
SMARCA1P28370 NKG7-205ENST00000600427 520 ntTSL 3 BASIC19.13■□□□□ 0.65
SMARCA1P28370 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC19.13■□□□□ 0.65
SMARCA1P28370 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms