Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGB1P09429 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGB1P09429 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGB1P09429 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGB1P09429 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
HMGB1P09429 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
HMGB1P09429 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC19.75■□□□□ 0.75
HMGB1P09429 AC096734.2-201ENST00000562054 433 ntBASIC19.75■□□□□ 0.75
HMGB1P09429 AC145285.3-201ENST00000564603 959 ntBASIC19.75■□□□□ 0.75
HMGB1P09429 AL031432.2-201ENST00000566714 459 ntBASIC19.75■□□□□ 0.75
HMGB1P09429 AL928711.1-201ENST00000570165 459 ntBASIC19.75■□□□□ 0.75
HMGB1P09429 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGB1P09429 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
HMGB1P09429 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HMGB1P09429 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGB1P09429 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC19.75■□□□□ 0.75
HMGB1P09429 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGB1P09429 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGB1P09429 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC19.75■□□□□ 0.75
HMGB1P09429 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGB1P09429 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
HMGB1P09429 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC19.75■□□□□ 0.75
HMGB1P09429 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGB1P09429 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGB1P09429 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
HMGB1P09429 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC19.74■□□□□ 0.75
HMGB1P09429 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC19.74■□□□□ 0.75
HMGB1P09429 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HMGB1P09429 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGB1P09429 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC19.74■□□□□ 0.75
HMGB1P09429 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
HMGB1P09429 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC19.74■□□□□ 0.75
HMGB1P09429 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
HMGB1P09429 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGB1P09429 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HMGB1P09429 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGB1P09429 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HMGB1P09429 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HMGB1P09429 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC19.74■□□□□ 0.75
HMGB1P09429 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGB1P09429 IGLL3P-201ENST00000412472 434 ntBASIC19.74■□□□□ 0.75
HMGB1P09429 FDX1P1-201ENST00000449115 551 ntBASIC19.74■□□□□ 0.75
HMGB1P09429 AL513480.1-201ENST00000451731 511 ntBASIC19.74■□□□□ 0.75
HMGB1P09429 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC19.74■□□□□ 0.75
HMGB1P09429 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC19.74■□□□□ 0.75
HMGB1P09429 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC19.74■□□□□ 0.75
HMGB1P09429 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC19.74■□□□□ 0.75
HMGB1P09429 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGB1P09429 MIR3909-201ENST00000579518 119 ntBASIC19.74■□□□□ 0.75
HMGB1P09429 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC19.74■□□□□ 0.75
HMGB1P09429 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGB1P09429 GPAA1P2-202ENST00000606848 1787 ntBASIC19.74■□□□□ 0.75
HMGB1P09429 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGB1P09429 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
HMGB1P09429 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGB1P09429 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
HMGB1P09429 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGB1P09429 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGB1P09429 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC19.74■□□□□ 0.75
HMGB1P09429 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC19.74■□□□□ 0.75
HMGB1P09429 AC006449.5-201ENST00000610658 2098 ntBASIC19.74■□□□□ 0.75
HMGB1P09429 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGB1P09429 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC19.74■□□□□ 0.75
HMGB1P09429 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
HMGB1P09429 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC19.74■□□□□ 0.75
HMGB1P09429 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC19.74■□□□□ 0.75
HMGB1P09429 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
HMGB1P09429 HARS-203ENST00000431330 1774 ntTSL 2 BASIC19.73■□□□□ 0.75
HMGB1P09429 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC19.73■□□□□ 0.75
HMGB1P09429 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC19.73■□□□□ 0.75
HMGB1P09429 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC19.73■□□□□ 0.75
HMGB1P09429 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HMGB1P09429 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC19.73■□□□□ 0.75
HMGB1P09429 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC19.73■□□□□ 0.75
HMGB1P09429 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
HMGB1P09429 RHOQP3-201ENST00000437982 621 ntBASIC19.73■□□□□ 0.75
HMGB1P09429 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HMGB1P09429 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC19.73■□□□□ 0.75
HMGB1P09429 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HMGB1P09429 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HMGB1P09429 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HMGB1P09429 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HMGB1P09429 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
HMGB1P09429 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HMGB1P09429 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HMGB1P09429 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC19.73■□□□□ 0.75
HMGB1P09429 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HMGB1P09429 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HMGB1P09429 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HMGB1P09429 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
HMGB1P09429 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HMGB1P09429 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC19.73■□□□□ 0.75
HMGB1P09429 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
HMGB1P09429 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HMGB1P09429 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC19.72■□□□□ 0.75
HMGB1P09429 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HMGB1P09429 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGB1P09429 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
HMGB1P09429 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
HMGB1P09429 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms