Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 SAPCD2P2-201ENST00000431719 1174 ntBASIC16.91■□□□□ 0.3
VIMP08670 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
VIMP08670 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC16.91■□□□□ 0.3
VIMP08670 AC026471.5-201ENST00000615068 467 ntBASIC16.91■□□□□ 0.3
VIMP08670 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
VIMP08670 TNRC18P2-201ENST00000417666 2714 ntBASIC16.91■□□□□ 0.3
VIMP08670 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VIMP08670 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VIMP08670 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VIMP08670 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VIMP08670 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
VIMP08670 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
VIMP08670 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VIMP08670 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.91■□□□□ 0.3
VIMP08670 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VIMP08670 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
VIMP08670 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
VIMP08670 AC013268.4-201ENST00000637413 2228 ntBASIC16.9■□□□□ 0.3
VIMP08670 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
VIMP08670 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.9■□□□□ 0.3
VIMP08670 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
VIMP08670 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC16.9■□□□□ 0.3
VIMP08670 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VIMP08670 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VIMP08670 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VIMP08670 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC16.9■□□□□ 0.3
VIMP08670 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC16.9■□□□□ 0.3
VIMP08670 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
VIMP08670 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
VIMP08670 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
VIMP08670 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VIMP08670 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC16.9■□□□□ 0.3
VIMP08670 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VIMP08670 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC16.9■□□□□ 0.3
VIMP08670 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
VIMP08670 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC16.9■□□□□ 0.3
VIMP08670 AL158047.1-201ENST00000445918 881 ntBASIC16.9■□□□□ 0.3
VIMP08670 HLA-J-202ENST00000469281 1241 ntBASIC16.9■□□□□ 0.3
VIMP08670 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VIMP08670 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC16.9■□□□□ 0.3
VIMP08670 C2orf69P3-201ENST00000565542 1120 ntBASIC16.9■□□□□ 0.3
VIMP08670 AC233702.5-201ENST00000584107 538 ntBASIC16.9■□□□□ 0.3
VIMP08670 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
VIMP08670 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC16.9■□□□□ 0.3
VIMP08670 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VIMP08670 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC16.9■□□□□ 0.3
VIMP08670 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
VIMP08670 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
VIMP08670 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
VIMP08670 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.9■□□□□ 0.3
VIMP08670 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VIMP08670 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VIMP08670 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.9■□□□□ 0.3
VIMP08670 AC097374.2-201ENST00000618617 1306 ntBASIC16.9■□□□□ 0.3
VIMP08670 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
VIMP08670 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VIMP08670 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VIMP08670 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC16.9■□□□□ 0.3
VIMP08670 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VIMP08670 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VIMP08670 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
VIMP08670 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
VIMP08670 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
VIMP08670 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VIMP08670 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VIMP08670 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VIMP08670 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VIMP08670 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.89■□□□□ 0.29
VIMP08670 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC16.89■□□□□ 0.29
VIMP08670 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC16.89■□□□□ 0.29
VIMP08670 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VIMP08670 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
VIMP08670 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VIMP08670 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
VIMP08670 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
VIMP08670 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VIMP08670 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VIMP08670 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
VIMP08670 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC16.89■□□□□ 0.29
VIMP08670 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.89■□□□□ 0.29
VIMP08670 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
VIMP08670 KRT18P48-201ENST00000434763 852 ntBASIC16.89■□□□□ 0.29
VIMP08670 AC068472.1-201ENST00000474589 881 ntBASIC16.89■□□□□ 0.29
VIMP08670 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC16.89■□□□□ 0.29
VIMP08670 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC16.89■□□□□ 0.29
VIMP08670 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VIMP08670 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC16.89■□□□□ 0.29
VIMP08670 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC16.89■□□□□ 0.29
VIMP08670 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC16.89■□□□□ 0.29
VIMP08670 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC16.89■□□□□ 0.29
VIMP08670 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VIMP08670 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VIMP08670 AL049637.2-201ENST00000641778 930 ntBASIC16.89■□□□□ 0.29
VIMP08670 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VIMP08670 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VIMP08670 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VIMP08670 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC16.89■□□□□ 0.29
VIMP08670 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VIMP08670 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
VIMP08670 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms