Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 AMT-206ENST00000458307 1860 ntTSL 2 BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 MYCLP1-201ENST00000372451 1075 ntBASIC12.66□□□□□ -0.38
HLA-DQA1P01909 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 AP003071.4-201ENST00000562276 1284 ntBASIC12.66□□□□□ -0.38
HLA-DQA1P01909 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 MIR4674-201ENST00000582457 87 ntBASIC12.66□□□□□ -0.38
HLA-DQA1P01909 AC010240.3-201ENST00000607688 395 ntBASIC12.66□□□□□ -0.38
HLA-DQA1P01909 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DQA1P01909 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
HLA-DQA1P01909 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
HLA-DQA1P01909 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HLA-DQA1P01909 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HLA-DQA1P01909 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
HLA-DQA1P01909 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
HLA-DQA1P01909 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC12.65□□□□□ -0.38
HLA-DQA1P01909 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HLA-DQA1P01909 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HLA-DQA1P01909 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
HLA-DQA1P01909 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC12.65□□□□□ -0.38
HLA-DQA1P01909 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.38
HLA-DQA1P01909 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC12.65□□□□□ -0.38
HLA-DQA1P01909 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC12.65□□□□□ -0.38
HLA-DQA1P01909 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC12.65□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms