Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 NCF1C-201ENST00000438382 1427 ntBASIC16.59■□□□□ 0.25
MKS1Q9NXB0 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 AC022532.1-201ENST00000624563 1728 ntBASIC16.59■□□□□ 0.25
MKS1Q9NXB0 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 GPAA1P2-202ENST00000606848 1787 ntBASIC16.59■□□□□ 0.25
MKS1Q9NXB0 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 PCGF3-213ENST00000620529 1899 ntBASIC16.59■□□□□ 0.25
MKS1Q9NXB0 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.58■□□□□ 0.25
MKS1Q9NXB0 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
MKS1Q9NXB0 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
MKS1Q9NXB0 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.58■□□□□ 0.25
MKS1Q9NXB0 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
MKS1Q9NXB0 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
MKS1Q9NXB0 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
MKS1Q9NXB0 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MKS1Q9NXB0 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MKS1Q9NXB0 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MKS1Q9NXB0 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MKS1Q9NXB0 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
MKS1Q9NXB0 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
MKS1Q9NXB0 AC092329.2-201ENST00000598402 547 ntBASIC16.58■□□□□ 0.24
MKS1Q9NXB0 AC010654.1-201ENST00000615722 808 ntBASIC16.58■□□□□ 0.24
MKS1Q9NXB0 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
MKS1Q9NXB0 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MKS1Q9NXB0 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.58■□□□□ 0.24
MKS1Q9NXB0 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.58■□□□□ 0.24
MKS1Q9NXB0 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
MKS1Q9NXB0 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
MKS1Q9NXB0 AC112504.1-201ENST00000623415 1841 ntBASIC16.58■□□□□ 0.24
MKS1Q9NXB0 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
MKS1Q9NXB0 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
MKS1Q9NXB0 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.58■□□□□ 0.24
MKS1Q9NXB0 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.58■□□□□ 0.24
MKS1Q9NXB0 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
MKS1Q9NXB0 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MKS1Q9NXB0 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
MKS1Q9NXB0 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
MKS1Q9NXB0 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.58■□□□□ 0.24
MKS1Q9NXB0 LINC00554-201ENST00000564841 3011 ntBASIC16.58■□□□□ 0.24
MKS1Q9NXB0 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MKS1Q9NXB0 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MKS1Q9NXB0 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MKS1Q9NXB0 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 CDC14C-201ENST00000428251 1719 ntBASIC16.57■□□□□ 0.24
MKS1Q9NXB0 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 AL031133.1-201ENST00000406807 723 ntBASIC16.57■□□□□ 0.24
MKS1Q9NXB0 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 LINC01023-201ENST00000606054 436 ntBASIC16.57■□□□□ 0.24
MKS1Q9NXB0 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 REXO1L3P-201ENST00000622202 1288 ntBASIC16.57■□□□□ 0.24
MKS1Q9NXB0 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MKS1Q9NXB0 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.56■□□□□ 0.24
MKS1Q9NXB0 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
MKS1Q9NXB0 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC16.56■□□□□ 0.24
MKS1Q9NXB0 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
MKS1Q9NXB0 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MKS1Q9NXB0 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MKS1Q9NXB0 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
MKS1Q9NXB0 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.56■□□□□ 0.24
MKS1Q9NXB0 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MKS1Q9NXB0 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MKS1Q9NXB0 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
MKS1Q9NXB0 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MKS1Q9NXB0 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC16.56■□□□□ 0.24
MKS1Q9NXB0 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
MKS1Q9NXB0 BET1L-202ENST00000332865 533 ntTSL 5 BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms