Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC18.64■□□□□ 0.57
VTA1Q9NP79 CCDC74BP1-201ENST00000508880 1123 ntBASIC18.64■□□□□ 0.57
VTA1Q9NP79 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VTA1Q9NP79 AL139011.1-202ENST00000642063 584 ntBASIC18.64■□□□□ 0.57
VTA1Q9NP79 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VTA1Q9NP79 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.57
VTA1Q9NP79 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
VTA1Q9NP79 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VTA1Q9NP79 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC18.64■□□□□ 0.57
VTA1Q9NP79 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VTA1Q9NP79 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VTA1Q9NP79 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
VTA1Q9NP79 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VTA1Q9NP79 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VTA1Q9NP79 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VTA1Q9NP79 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
VTA1Q9NP79 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC18.63■□□□□ 0.57
VTA1Q9NP79 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VTA1Q9NP79 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VTA1Q9NP79 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
VTA1Q9NP79 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VTA1Q9NP79 GOLGA2P9-201ENST00000596977 1937 ntBASIC18.63■□□□□ 0.57
VTA1Q9NP79 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
VTA1Q9NP79 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
VTA1Q9NP79 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VTA1Q9NP79 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
VTA1Q9NP79 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VTA1Q9NP79 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VTA1Q9NP79 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VTA1Q9NP79 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VTA1Q9NP79 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VTA1Q9NP79 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
VTA1Q9NP79 PIN1P1-201ENST00000412108 996 ntBASIC18.63■□□□□ 0.57
VTA1Q9NP79 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC18.63■□□□□ 0.57
VTA1Q9NP79 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
VTA1Q9NP79 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VTA1Q9NP79 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC18.63■□□□□ 0.57
VTA1Q9NP79 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC18.63■□□□□ 0.57
VTA1Q9NP79 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC18.63■□□□□ 0.57
VTA1Q9NP79 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC18.63■□□□□ 0.57
VTA1Q9NP79 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC18.63■□□□□ 0.57
VTA1Q9NP79 RAB34-223ENST00000636154 730 ntTSL 2 BASIC18.63■□□□□ 0.57
VTA1Q9NP79 CETN4P-206ENST00000642099 2168 ntBASIC18.63■□□□□ 0.57
VTA1Q9NP79 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
VTA1Q9NP79 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VTA1Q9NP79 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
VTA1Q9NP79 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
VTA1Q9NP79 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.63■□□□□ 0.57
VTA1Q9NP79 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC18.63■□□□□ 0.57
VTA1Q9NP79 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VTA1Q9NP79 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VTA1Q9NP79 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
VTA1Q9NP79 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.63■□□□□ 0.57
VTA1Q9NP79 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
VTA1Q9NP79 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC18.62■□□□□ 0.57
VTA1Q9NP79 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC18.62■□□□□ 0.57
VTA1Q9NP79 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
VTA1Q9NP79 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VTA1Q9NP79 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VTA1Q9NP79 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.62■□□□□ 0.57
VTA1Q9NP79 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VTA1Q9NP79 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
VTA1Q9NP79 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VTA1Q9NP79 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
VTA1Q9NP79 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VTA1Q9NP79 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VTA1Q9NP79 AC009477.1-201ENST00000452936 217 ntBASIC18.62■□□□□ 0.57
VTA1Q9NP79 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VTA1Q9NP79 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VTA1Q9NP79 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC18.62■□□□□ 0.57
VTA1Q9NP79 RNA5SP410-201ENST00000516285 106 ntBASIC18.62■□□□□ 0.57
VTA1Q9NP79 AP002490.2-201ENST00000524791 560 ntBASIC18.62■□□□□ 0.57
VTA1Q9NP79 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC18.62■□□□□ 0.57
VTA1Q9NP79 MAX-210ENST00000555419 765 ntTSL 5 BASIC18.62■□□□□ 0.57
VTA1Q9NP79 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC18.62■□□□□ 0.57
VTA1Q9NP79 AC027307.3-201ENST00000594262 1100 ntBASIC18.62■□□□□ 0.57
VTA1Q9NP79 FHL2-212ENST00000607522 759 ntTSL 2 BASIC18.62■□□□□ 0.57
VTA1Q9NP79 RN7SL828P-201ENST00000607615 303 ntBASIC18.62■□□□□ 0.57
VTA1Q9NP79 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VTA1Q9NP79 TEX28P1-201ENST00000613479 1221 ntBASIC18.62■□□□□ 0.57
VTA1Q9NP79 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VTA1Q9NP79 TEX28P2-201ENST00000617764 1221 ntBASIC18.62■□□□□ 0.57
VTA1Q9NP79 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VTA1Q9NP79 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VTA1Q9NP79 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
VTA1Q9NP79 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VTA1Q9NP79 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VTA1Q9NP79 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VTA1Q9NP79 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC18.62■□□□□ 0.57
VTA1Q9NP79 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VTA1Q9NP79 AC092068.3-201ENST00000587894 2016 ntBASIC18.62■□□□□ 0.57
VTA1Q9NP79 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VTA1Q9NP79 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.62■□□□□ 0.57
VTA1Q9NP79 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
VTA1Q9NP79 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
VTA1Q9NP79 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
VTA1Q9NP79 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.61■□□□□ 0.57
VTA1Q9NP79 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
VTA1Q9NP79 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VTA1Q9NP79 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms