Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
SHANK3Q9BYB0 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SHANK3Q9BYB0 MPV17-208ENST00000405076 603 ntTSL 5 BASIC21.35■■□□□ 1.01
SHANK3Q9BYB0 AC087499.6-201ENST00000411576 835 ntBASIC21.35■■□□□ 1.01
SHANK3Q9BYB0 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC21.35■■□□□ 1.01
SHANK3Q9BYB0 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC21.35■■□□□ 1.01
SHANK3Q9BYB0 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC21.35■■□□□ 1.01
SHANK3Q9BYB0 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC21.35■■□□□ 1.01
SHANK3Q9BYB0 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
SHANK3Q9BYB0 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SHANK3Q9BYB0 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
SHANK3Q9BYB0 AL512652.2-201ENST00000625156 1716 ntBASIC21.34■■□□□ 1.01
SHANK3Q9BYB0 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SHANK3Q9BYB0 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SHANK3Q9BYB0 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SHANK3Q9BYB0 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SHANK3Q9BYB0 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
SHANK3Q9BYB0 HIST1H2BPS3-201ENST00000419683 341 ntBASIC21.34■■□□□ 1.01
SHANK3Q9BYB0 EEF1DP4-201ENST00000446006 880 ntBASIC21.34■■□□□ 1.01
SHANK3Q9BYB0 RN7SL752P-201ENST00000463779 287 ntBASIC21.34■■□□□ 1.01
SHANK3Q9BYB0 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SHANK3Q9BYB0 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC21.34■■□□□ 1.01
SHANK3Q9BYB0 RRP7BP-205ENST00000566851 833 ntBASIC21.34■■□□□ 1.01
SHANK3Q9BYB0 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC21.34■■□□□ 1.01
SHANK3Q9BYB0 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC21.34■■□□□ 1.01
SHANK3Q9BYB0 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
SHANK3Q9BYB0 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SHANK3Q9BYB0 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
SHANK3Q9BYB0 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
SHANK3Q9BYB0 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SHANK3Q9BYB0 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SHANK3Q9BYB0 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
SHANK3Q9BYB0 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
SHANK3Q9BYB0 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC21.33■■□□□ 1.01
SHANK3Q9BYB0 PP12613-201ENST00000424958 2230 ntBASIC21.33■■□□□ 1.01
SHANK3Q9BYB0 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SHANK3Q9BYB0 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC21.33■■□□□ 1.01
SHANK3Q9BYB0 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SHANK3Q9BYB0 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SHANK3Q9BYB0 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC21.33■■□□□ 1.01
SHANK3Q9BYB0 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC21.33■■□□□ 1.01
SHANK3Q9BYB0 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC21.33■■□□□ 1.01
SHANK3Q9BYB0 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
SHANK3Q9BYB0 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
SHANK3Q9BYB0 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
SHANK3Q9BYB0 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SHANK3Q9BYB0 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC21.33■■□□□ 1
SHANK3Q9BYB0 AC067852.2-201ENST00000590513 2313 ntBASIC21.33■■□□□ 1
SHANK3Q9BYB0 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC21.33■■□□□ 1
SHANK3Q9BYB0 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC21.33■■□□□ 1
SHANK3Q9BYB0 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SHANK3Q9BYB0 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SHANK3Q9BYB0 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SHANK3Q9BYB0 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC21.33■■□□□ 1
SHANK3Q9BYB0 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC21.33■■□□□ 1
SHANK3Q9BYB0 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
SHANK3Q9BYB0 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC21.32■■□□□ 1
SHANK3Q9BYB0 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
SHANK3Q9BYB0 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC21.32■■□□□ 1
SHANK3Q9BYB0 AC010319.3-201ENST00000597028 470 ntBASIC21.32■■□□□ 1
SHANK3Q9BYB0 AC093726.1-201ENST00000608064 963 ntBASIC21.32■■□□□ 1
SHANK3Q9BYB0 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC21.32■■□□□ 1
SHANK3Q9BYB0 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SHANK3Q9BYB0 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
SHANK3Q9BYB0 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SHANK3Q9BYB0 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SHANK3Q9BYB0 RELA-227ENST00000615805 2236 ntTSL 5 BASIC21.32■■□□□ 1
SHANK3Q9BYB0 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC21.32■■□□□ 1
SHANK3Q9BYB0 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC21.32■■□□□ 1
SHANK3Q9BYB0 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SHANK3Q9BYB0 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
SHANK3Q9BYB0 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SHANK3Q9BYB0 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
SHANK3Q9BYB0 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SHANK3Q9BYB0 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC21.32■■□□□ 1
SHANK3Q9BYB0 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC21.32■■□□□ 1
SHANK3Q9BYB0 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC21.32■■□□□ 1
SHANK3Q9BYB0 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC21.32■■□□□ 1
SHANK3Q9BYB0 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC21.32■■□□□ 1
SHANK3Q9BYB0 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC21.32■■□□□ 1
SHANK3Q9BYB0 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC21.32■■□□□ 1
SHANK3Q9BYB0 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC21.32■■□□□ 1
SHANK3Q9BYB0 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC21.31■■□□□ 1
SHANK3Q9BYB0 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
SHANK3Q9BYB0 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC21.31■■□□□ 1
SHANK3Q9BYB0 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
SHANK3Q9BYB0 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC21.31■■□□□ 1
SHANK3Q9BYB0 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SHANK3Q9BYB0 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SHANK3Q9BYB0 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SHANK3Q9BYB0 HIST3H2BA-201ENST00000436555 524 ntBASIC21.31■■□□□ 1
SHANK3Q9BYB0 AC022210.1-201ENST00000449856 793 ntBASIC21.31■■□□□ 1
SHANK3Q9BYB0 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SHANK3Q9BYB0 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC21.31■■□□□ 1
SHANK3Q9BYB0 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
SHANK3Q9BYB0 LINC01115-203ENST00000606068 577 ntBASIC21.31■■□□□ 1
SHANK3Q9BYB0 AC074044.1-201ENST00000609673 707 ntBASIC21.31■■□□□ 1
SHANK3Q9BYB0 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SHANK3Q9BYB0 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
SHANK3Q9BYB0 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms