Protein–RNA interactions for Protein: Q96P16

RPRD1A, Regulation of nuclear pre-mRNA domain-containing protein 1A, humanhuman

Predicted RBP Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPRD1AQ96P16 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.27■□□□□ 0.36
RPRD1AQ96P16 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.27■□□□□ 0.36
RPRD1AQ96P16 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.27■□□□□ 0.36
RPRD1AQ96P16 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
RPRD1AQ96P16 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RPRD1AQ96P16 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.27■□□□□ 0.36
RPRD1AQ96P16 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RPRD1AQ96P16 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RPRD1AQ96P16 SLC9A3P2-201ENST00000447821 2021 ntBASIC17.27■□□□□ 0.36
RPRD1AQ96P16 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
RPRD1AQ96P16 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
RPRD1AQ96P16 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
RPRD1AQ96P16 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RPRD1AQ96P16 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RPRD1AQ96P16 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
RPRD1AQ96P16 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC17.27■□□□□ 0.36
RPRD1AQ96P16 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC17.27■□□□□ 0.36
RPRD1AQ96P16 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RPRD1AQ96P16 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC17.27■□□□□ 0.36
RPRD1AQ96P16 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RPRD1AQ96P16 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC17.27■□□□□ 0.36
RPRD1AQ96P16 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC17.27■□□□□ 0.36
RPRD1AQ96P16 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC17.27■□□□□ 0.36
RPRD1AQ96P16 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RPRD1AQ96P16 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
RPRD1AQ96P16 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
RPRD1AQ96P16 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
RPRD1AQ96P16 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
RPRD1AQ96P16 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
RPRD1AQ96P16 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
RPRD1AQ96P16 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 MIR4469-201ENST00000583919 79 ntBASIC17.26■□□□□ 0.35
RPRD1AQ96P16 AL009183.1-201ENST00000603760 355 ntBASIC17.26■□□□□ 0.35
RPRD1AQ96P16 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 AL671710.1-201ENST00000610245 2349 ntBASIC17.26■□□□□ 0.35
RPRD1AQ96P16 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.26■□□□□ 0.35
RPRD1AQ96P16 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
RPRD1AQ96P16 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
RPRD1AQ96P16 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
RPRD1AQ96P16 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC17.25■□□□□ 0.35
RPRD1AQ96P16 AC020916.1-201ENST00000587762 1774 ntBASIC17.25■□□□□ 0.35
RPRD1AQ96P16 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RPRD1AQ96P16 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
RPRD1AQ96P16 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RPRD1AQ96P16 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
RPRD1AQ96P16 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RPRD1AQ96P16 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
RPRD1AQ96P16 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RPRD1AQ96P16 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17.25■□□□□ 0.35
RPRD1AQ96P16 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RPRD1AQ96P16 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RPRD1AQ96P16 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC17.25■□□□□ 0.35
RPRD1AQ96P16 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC17.25■□□□□ 0.35
RPRD1AQ96P16 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
RPRD1AQ96P16 CEND1P1-201ENST00000451006 455 ntBASIC17.25■□□□□ 0.35
RPRD1AQ96P16 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RPRD1AQ96P16 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
RPRD1AQ96P16 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.25■□□□□ 0.35
RPRD1AQ96P16 SIGLEC29P-201ENST00000599873 1114 ntBASIC17.25■□□□□ 0.35
RPRD1AQ96P16 AC092902.6-201ENST00000641783 218 ntBASIC17.25■□□□□ 0.35
RPRD1AQ96P16 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RPRD1AQ96P16 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
RPRD1AQ96P16 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RPRD1AQ96P16 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RPRD1AQ96P16 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms