Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 DDT-204ENST00000404092 805 ntTSL 3 BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 MCCD1P2-201ENST00000423228 335 ntBASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 MPDU1-223ENST00000582151 728 ntBASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 AC131009.4-201ENST00000624048 1740 ntBASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 PCDHB17P-201ENST00000539533 2393 ntBASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 HCG4-201ENST00000418983 998 ntBASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 NMU-203ENST00000507338 658 ntTSL 3 BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 MIR3687-2-201ENST00000577708 61 ntBASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 MIR3687-1-201ENST00000614492 61 ntBASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 AP001350.2-201ENST00000625104 1094 ntBASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 AC084018.2-201ENST00000613093 2607 ntBASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 AC005915.1-201ENST00000624912 2018 ntBASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PTCHD1Q96NR3 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
PTCHD1Q96NR3 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PTCHD1Q96NR3 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PTCHD1Q96NR3 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PTCHD1Q96NR3 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms