Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TTC28Q96AY4 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
TTC28Q96AY4 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TTC28Q96AY4 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TTC28Q96AY4 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
TTC28Q96AY4 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.73■□□□□ 0.27
TTC28Q96AY4 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC16.73■□□□□ 0.27
TTC28Q96AY4 LARP4-220ENST00000615080 856 ntTSL 5 BASIC16.73■□□□□ 0.27
TTC28Q96AY4 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TTC28Q96AY4 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TTC28Q96AY4 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TTC28Q96AY4 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TTC28Q96AY4 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC16.72■□□□□ 0.27
TTC28Q96AY4 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TTC28Q96AY4 AC011491.1-203ENST00000637688 543 ntBASIC16.72■□□□□ 0.27
TTC28Q96AY4 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TTC28Q96AY4 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TTC28Q96AY4 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TTC28Q96AY4 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
TTC28Q96AY4 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TTC28Q96AY4 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC16.72■□□□□ 0.27
TTC28Q96AY4 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TTC28Q96AY4 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
TTC28Q96AY4 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TTC28Q96AY4 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.72■□□□□ 0.27
TTC28Q96AY4 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TTC28Q96AY4 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TTC28Q96AY4 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TTC28Q96AY4 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC16.72■□□□□ 0.27
TTC28Q96AY4 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TTC28Q96AY4 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC16.72■□□□□ 0.27
TTC28Q96AY4 SOCS2P1-201ENST00000417727 557 ntBASIC16.72■□□□□ 0.27
TTC28Q96AY4 MTX1P1-201ENST00000440904 838 ntBASIC16.72■□□□□ 0.27
TTC28Q96AY4 AC125604.1-201ENST00000496255 707 ntBASIC16.72■□□□□ 0.27
TTC28Q96AY4 CFL1-206ENST00000527344 962 ntTSL 2 BASIC16.72■□□□□ 0.27
TTC28Q96AY4 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TTC28Q96AY4 GNRHR2-203ENST00000581100 1187 ntBASIC16.72■□□□□ 0.27
TTC28Q96AY4 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC16.72■□□□□ 0.27
TTC28Q96AY4 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TTC28Q96AY4 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
TTC28Q96AY4 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC16.72■□□□□ 0.27
TTC28Q96AY4 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
TTC28Q96AY4 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC16.71■□□□□ 0.27
TTC28Q96AY4 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC16.71■□□□□ 0.27
TTC28Q96AY4 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.71■□□□□ 0.27
TTC28Q96AY4 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC16.71■□□□□ 0.27
TTC28Q96AY4 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC16.71■□□□□ 0.27
TTC28Q96AY4 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
TTC28Q96AY4 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC16.71■□□□□ 0.27
TTC28Q96AY4 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TTC28Q96AY4 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC16.71■□□□□ 0.27
TTC28Q96AY4 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC16.71■□□□□ 0.27
TTC28Q96AY4 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
TTC28Q96AY4 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC16.71■□□□□ 0.27
TTC28Q96AY4 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
TTC28Q96AY4 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
TTC28Q96AY4 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
TTC28Q96AY4 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
TTC28Q96AY4 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TTC28Q96AY4 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TTC28Q96AY4 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
TTC28Q96AY4 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TTC28Q96AY4 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC16.71■□□□□ 0.26
TTC28Q96AY4 PARVG-202ENST00000415224 999 ntTSL 2 BASIC16.71■□□□□ 0.26
TTC28Q96AY4 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC16.71■□□□□ 0.26
TTC28Q96AY4 AC012441.1-201ENST00000446669 685 ntBASIC16.71■□□□□ 0.26
TTC28Q96AY4 IMP3P2-201ENST00000489760 475 ntBASIC16.71■□□□□ 0.26
TTC28Q96AY4 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC16.71■□□□□ 0.26
TTC28Q96AY4 AC141586.1-203ENST00000567242 366 ntBASIC16.71■□□□□ 0.26
TTC28Q96AY4 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC16.71■□□□□ 0.26
TTC28Q96AY4 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC16.71■□□□□ 0.26
TTC28Q96AY4 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.71■□□□□ 0.26
TTC28Q96AY4 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC16.71■□□□□ 0.26
TTC28Q96AY4 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
TTC28Q96AY4 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TTC28Q96AY4 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.7■□□□□ 0.26
TTC28Q96AY4 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC16.7■□□□□ 0.26
TTC28Q96AY4 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC16.7■□□□□ 0.26
TTC28Q96AY4 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TTC28Q96AY4 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
TTC28Q96AY4 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
TTC28Q96AY4 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
TTC28Q96AY4 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TTC28Q96AY4 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC16.7■□□□□ 0.26
TTC28Q96AY4 SPTLC1P5-201ENST00000450718 252 ntBASIC16.7■□□□□ 0.26
TTC28Q96AY4 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC16.7■□□□□ 0.26
TTC28Q96AY4 MIR3147-201ENST00000577811 66 ntBASIC16.7■□□□□ 0.26
TTC28Q96AY4 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC16.7■□□□□ 0.26
TTC28Q96AY4 AL096828.3-201ENST00000615354 462 ntBASIC16.7■□□□□ 0.26
TTC28Q96AY4 CU633904.3-201ENST00000624042 1029 ntBASIC16.7■□□□□ 0.26
TTC28Q96AY4 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TTC28Q96AY4 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
TTC28Q96AY4 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC16.7■□□□□ 0.26
TTC28Q96AY4 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TTC28Q96AY4 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
TTC28Q96AY4 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
TTC28Q96AY4 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
TTC28Q96AY4 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
TTC28Q96AY4 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.7■□□□□ 0.26
TTC28Q96AY4 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms