Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP39Q53GS9 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC17.07■□□□□ 0.32
USP39Q53GS9 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.07■□□□□ 0.32
USP39Q53GS9 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP39Q53GS9 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.07■□□□□ 0.32
USP39Q53GS9 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP39Q53GS9 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
USP39Q53GS9 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP39Q53GS9 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
USP39Q53GS9 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.06■□□□□ 0.32
USP39Q53GS9 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USP39Q53GS9 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.06■□□□□ 0.32
USP39Q53GS9 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP39Q53GS9 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP39Q53GS9 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
USP39Q53GS9 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.06■□□□□ 0.32
USP39Q53GS9 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.06■□□□□ 0.32
USP39Q53GS9 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP39Q53GS9 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.06■□□□□ 0.32
USP39Q53GS9 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
USP39Q53GS9 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP39Q53GS9 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC17.06■□□□□ 0.32
USP39Q53GS9 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
USP39Q53GS9 AC107890.1-201ENST00000422478 521 ntBASIC17.06■□□□□ 0.32
USP39Q53GS9 AC005034.1-201ENST00000426657 489 ntBASIC17.06■□□□□ 0.32
USP39Q53GS9 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC17.06■□□□□ 0.32
USP39Q53GS9 RBPMS2P1-201ENST00000437762 623 ntBASIC17.06■□□□□ 0.32
USP39Q53GS9 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC17.06■□□□□ 0.32
USP39Q53GS9 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USP39Q53GS9 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC17.06■□□□□ 0.32
USP39Q53GS9 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC17.06■□□□□ 0.32
USP39Q53GS9 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USP39Q53GS9 DUX4L17-201ENST00000557360 1267 ntBASIC17.06■□□□□ 0.32
USP39Q53GS9 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC17.06■□□□□ 0.32
USP39Q53GS9 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.06■□□□□ 0.32
USP39Q53GS9 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP39Q53GS9 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC17.06■□□□□ 0.32
USP39Q53GS9 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC17.06■□□□□ 0.32
USP39Q53GS9 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP39Q53GS9 LINC01451-201ENST00000623792 534 ntBASIC17.06■□□□□ 0.32
USP39Q53GS9 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP39Q53GS9 CROCCP2-202ENST00000412962 2773 ntBASIC17.06■□□□□ 0.32
USP39Q53GS9 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP39Q53GS9 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP39Q53GS9 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USP39Q53GS9 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP39Q53GS9 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USP39Q53GS9 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
USP39Q53GS9 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
USP39Q53GS9 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP39Q53GS9 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP39Q53GS9 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP39Q53GS9 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP39Q53GS9 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
USP39Q53GS9 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP39Q53GS9 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP39Q53GS9 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP39Q53GS9 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.05■□□□□ 0.32
USP39Q53GS9 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP39Q53GS9 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.05■□□□□ 0.32
USP39Q53GS9 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP39Q53GS9 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP39Q53GS9 KLK8-202ENST00000320838 456 ntTSL 5 BASIC17.05■□□□□ 0.32
USP39Q53GS9 AC015922.1-201ENST00000421102 1152 ntBASIC17.05■□□□□ 0.32
USP39Q53GS9 FAM58DP-201ENST00000428076 619 ntBASIC17.05■□□□□ 0.32
USP39Q53GS9 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC17.05■□□□□ 0.32
USP39Q53GS9 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC17.05■□□□□ 0.32
USP39Q53GS9 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
USP39Q53GS9 OARD1-208ENST00000469104 704 ntTSL 2 BASIC17.05■□□□□ 0.32
USP39Q53GS9 AC125807.1-201ENST00000483097 614 ntBASIC17.05■□□□□ 0.32
USP39Q53GS9 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC17.05■□□□□ 0.32
USP39Q53GS9 AC087641.1-201ENST00000557561 1021 ntBASIC17.05■□□□□ 0.32
USP39Q53GS9 NAA60-208ENST00000570819 833 ntTSL 2 BASIC17.05■□□□□ 0.32
USP39Q53GS9 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC17.05■□□□□ 0.32
USP39Q53GS9 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP39Q53GS9 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC17.05■□□□□ 0.32
USP39Q53GS9 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.05■□□□□ 0.32
USP39Q53GS9 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP39Q53GS9 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP39Q53GS9 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP39Q53GS9 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP39Q53GS9 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
USP39Q53GS9 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP39Q53GS9 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP39Q53GS9 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP39Q53GS9 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
USP39Q53GS9 AP001094.4-201ENST00000579008 2176 ntBASIC17.05■□□□□ 0.32
USP39Q53GS9 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.05■□□□□ 0.32
USP39Q53GS9 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP39Q53GS9 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP39Q53GS9 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USP39Q53GS9 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP39Q53GS9 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.04■□□□□ 0.32
USP39Q53GS9 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
USP39Q53GS9 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP39Q53GS9 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USP39Q53GS9 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
USP39Q53GS9 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
USP39Q53GS9 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USP39Q53GS9 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms