Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
TPM4P67936 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TPM4P67936 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TPM4P67936 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TPM4P67936 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC18.89■□□□□ 0.61
TPM4P67936 LINC00895-201ENST00000629028 1637 ntBASIC18.89■□□□□ 0.61
TPM4P67936 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TPM4P67936 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TPM4P67936 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
TPM4P67936 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TPM4P67936 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TPM4P67936 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
TPM4P67936 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC18.88■□□□□ 0.61
TPM4P67936 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
TPM4P67936 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
TPM4P67936 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
TPM4P67936 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
TPM4P67936 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TPM4P67936 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TPM4P67936 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TPM4P67936 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TPM4P67936 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
TPM4P67936 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
TPM4P67936 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18.88■□□□□ 0.61
TPM4P67936 TSPY22P-201ENST00000427496 604 ntBASIC18.88■□□□□ 0.61
TPM4P67936 VENTXP7-201ENST00000475503 772 ntBASIC18.88■□□□□ 0.61
TPM4P67936 LY6E-213ENST00000522528 606 ntTSL 3 BASIC18.88■□□□□ 0.61
TPM4P67936 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC18.88■□□□□ 0.61
TPM4P67936 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC18.88■□□□□ 0.61
TPM4P67936 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC18.88■□□□□ 0.61
TPM4P67936 HYMAI.1-201ENST00000620949 238 ntBASIC18.88■□□□□ 0.61
TPM4P67936 AC073592.5-201ENST00000624854 528 ntBASIC18.88■□□□□ 0.61
TPM4P67936 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
TPM4P67936 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TPM4P67936 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC18.88■□□□□ 0.61
TPM4P67936 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
TPM4P67936 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC18.88■□□□□ 0.61
TPM4P67936 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TPM4P67936 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TPM4P67936 ING5-213ENST00000636051 4199 ntTSL 5 BASIC18.88■□□□□ 0.61
TPM4P67936 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
TPM4P67936 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
TPM4P67936 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
TPM4P67936 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TPM4P67936 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TPM4P67936 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC18.88■□□□□ 0.61
TPM4P67936 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
TPM4P67936 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TPM4P67936 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
TPM4P67936 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TPM4P67936 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
TPM4P67936 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TPM4P67936 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
TPM4P67936 AL365203.3-201ENST00000609742 2057 ntBASIC18.88■□□□□ 0.61
TPM4P67936 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TPM4P67936 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TPM4P67936 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TPM4P67936 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC18.88■□□□□ 0.61
TPM4P67936 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TPM4P67936 AC105917.1-201ENST00000506637 2539 ntBASIC18.88■□□□□ 0.61
TPM4P67936 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TPM4P67936 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC18.87■□□□□ 0.61
TPM4P67936 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
TPM4P67936 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
TPM4P67936 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC18.87■□□□□ 0.61
TPM4P67936 TERF1P1-201ENST00000311003 1181 ntBASIC18.87■□□□□ 0.61
TPM4P67936 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TPM4P67936 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TPM4P67936 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
TPM4P67936 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TPM4P67936 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TPM4P67936 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
TPM4P67936 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
TPM4P67936 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TPM4P67936 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TPM4P67936 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TPM4P67936 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
TPM4P67936 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TPM4P67936 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18.87■□□□□ 0.61
TPM4P67936 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC18.87■□□□□ 0.61
TPM4P67936 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TPM4P67936 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC18.87■□□□□ 0.61
TPM4P67936 HYMAI-201ENST00000635591 3347 ntBASIC18.87■□□□□ 0.61
TPM4P67936 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
TPM4P67936 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC18.87■□□□□ 0.61
TPM4P67936 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TPM4P67936 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TPM4P67936 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TPM4P67936 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TPM4P67936 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TPM4P67936 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TPM4P67936 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
TPM4P67936 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TPM4P67936 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC18.86■□□□□ 0.61
TPM4P67936 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TPM4P67936 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC18.86■□□□□ 0.61
TPM4P67936 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
TPM4P67936 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
TPM4P67936 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
TPM4P67936 TK2-221ENST00000620035 5060 ntTSL 2 BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms