Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA3P55318 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA3P55318 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA3P55318 DECR2-212ENST00000627716 352 ntTSL 2 BASIC12.67□□□□□ -0.38
FOXA3P55318 ANKRD20A8P-203ENST00000641373 517 ntBASIC12.67□□□□□ -0.38
FOXA3P55318 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
FOXA3P55318 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC12.67□□□□□ -0.38
FOXA3P55318 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA3P55318 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC12.67□□□□□ -0.38
FOXA3P55318 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC12.67□□□□□ -0.38
FOXA3P55318 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA3P55318 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA3P55318 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA3P55318 HLA-DQB2-231ENST00000435145 2026 ntBASIC12.67□□□□□ -0.38
FOXA3P55318 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
FOXA3P55318 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA3P55318 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA3P55318 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA3P55318 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
FOXA3P55318 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA3P55318 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
FOXA3P55318 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA3P55318 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA3P55318 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA3P55318 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC12.66□□□□□ -0.38
FOXA3P55318 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC12.66□□□□□ -0.38
FOXA3P55318 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA3P55318 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC12.66□□□□□ -0.38
FOXA3P55318 AC097376.2-205ENST00000610159 5334 ntBASIC12.66□□□□□ -0.38
FOXA3P55318 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA3P55318 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA3P55318 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA3P55318 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA3P55318 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA3P55318 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA3P55318 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC12.66□□□□□ -0.38
FOXA3P55318 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA3P55318 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA3P55318 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC12.66□□□□□ -0.38
FOXA3P55318 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA3P55318 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA3P55318 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA3P55318 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC12.66□□□□□ -0.38
FOXA3P55318 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA3P55318 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA3P55318 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA3P55318 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC12.66□□□□□ -0.38
FOXA3P55318 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC12.66□□□□□ -0.38
FOXA3P55318 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA3P55318 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
FOXA3P55318 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA3P55318 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA3P55318 MTCL1P1-201ENST00000446207 792 ntBASIC12.66□□□□□ -0.38
FOXA3P55318 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC12.66□□□□□ -0.38
FOXA3P55318 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA3P55318 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC12.66□□□□□ -0.38
FOXA3P55318 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC12.66□□□□□ -0.38
FOXA3P55318 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC12.66□□□□□ -0.38
FOXA3P55318 TEN1-204ENST00000588202 862 ntTSL 3 BASIC12.66□□□□□ -0.38
FOXA3P55318 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC12.66□□□□□ -0.38
FOXA3P55318 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC12.66□□□□□ -0.38
FOXA3P55318 AP001412.1-201ENST00000608405 714 ntBASIC12.66□□□□□ -0.38
FOXA3P55318 AC019129.2-201ENST00000609837 1235 ntBASIC12.66□□□□□ -0.38
FOXA3P55318 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
FOXA3P55318 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
FOXA3P55318 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC12.66□□□□□ -0.38
FOXA3P55318 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA3P55318 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC12.66□□□□□ -0.38
FOXA3P55318 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC12.66□□□□□ -0.38
FOXA3P55318 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA3P55318 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
FOXA3P55318 AC073347.1-201ENST00000421633 2643 ntBASIC12.66□□□□□ -0.38
FOXA3P55318 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA3P55318 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
FOXA3P55318 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA3P55318 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
FOXA3P55318 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
FOXA3P55318 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC12.66□□□□□ -0.38
FOXA3P55318 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
FOXA3P55318 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
FOXA3P55318 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
FOXA3P55318 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
FOXA3P55318 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC12.65□□□□□ -0.38
FOXA3P55318 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
FOXA3P55318 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
FOXA3P55318 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
FOXA3P55318 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC12.65□□□□□ -0.38
FOXA3P55318 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
FOXA3P55318 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
FOXA3P55318 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
FOXA3P55318 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
FOXA3P55318 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
FOXA3P55318 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
FOXA3P55318 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC12.65□□□□□ -0.38
FOXA3P55318 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
FOXA3P55318 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC12.65□□□□□ -0.38
FOXA3P55318 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
FOXA3P55318 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC12.65□□□□□ -0.38
FOXA3P55318 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
FOXA3P55318 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms