Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SOX2P48431 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SOX2P48431 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
SOX2P48431 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC14.84□□□□□ -0.03
SOX2P48431 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC14.84□□□□□ -0.03
SOX2P48431 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
SOX2P48431 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SOX2P48431 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SOX2P48431 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC14.84□□□□□ -0.03
SOX2P48431 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
SOX2P48431 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SOX2P48431 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC14.84□□□□□ -0.03
SOX2P48431 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC14.84□□□□□ -0.03
SOX2P48431 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SOX2P48431 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SOX2P48431 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SOX2P48431 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC14.84□□□□□ -0.03
SOX2P48431 CD9-202ENST00000382515 1229 ntTSL 5 BASIC14.84□□□□□ -0.03
SOX2P48431 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC14.84□□□□□ -0.03
SOX2P48431 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC14.84□□□□□ -0.03
SOX2P48431 AC063952.2-201ENST00000498792 1227 ntBASIC14.84□□□□□ -0.03
SOX2P48431 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC14.84□□□□□ -0.03
SOX2P48431 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SOX2P48431 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SOX2P48431 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC14.84□□□□□ -0.03
SOX2P48431 RBM42-202ENST00000586618 771 ntTSL 3 BASIC14.84□□□□□ -0.03
SOX2P48431 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
SOX2P48431 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
SOX2P48431 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC14.84□□□□□ -0.03
SOX2P48431 AD001527.2-201ENST00000622994 785 ntBASIC14.84□□□□□ -0.03
SOX2P48431 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SOX2P48431 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
SOX2P48431 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SOX2P48431 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SOX2P48431 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC14.84□□□□□ -0.03
SOX2P48431 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
SOX2P48431 SLC9A7P1-201ENST00000554295 3311 ntBASIC14.84□□□□□ -0.03
SOX2P48431 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC14.84□□□□□ -0.03
SOX2P48431 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
SOX2P48431 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SOX2P48431 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SOX2P48431 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.03
SOX2P48431 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC14.83□□□□□ -0.03
SOX2P48431 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
SOX2P48431 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
SOX2P48431 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
SOX2P48431 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SOX2P48431 AL596257.1-201ENST00000641463 2694 ntBASIC14.83□□□□□ -0.03
SOX2P48431 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SOX2P48431 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SOX2P48431 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
SOX2P48431 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC14.83□□□□□ -0.04
SOX2P48431 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SOX2P48431 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SOX2P48431 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SOX2P48431 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SOX2P48431 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
SOX2P48431 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.04
SOX2P48431 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SOX2P48431 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC14.83□□□□□ -0.04
SOX2P48431 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC14.83□□□□□ -0.04
SOX2P48431 VENTXP7-201ENST00000475503 772 ntBASIC14.83□□□□□ -0.04
SOX2P48431 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.04
SOX2P48431 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SOX2P48431 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC14.83□□□□□ -0.04
SOX2P48431 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC14.83□□□□□ -0.04
SOX2P48431 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC14.83□□□□□ -0.04
SOX2P48431 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC14.83□□□□□ -0.04
SOX2P48431 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
SOX2P48431 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SOX2P48431 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SOX2P48431 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
SOX2P48431 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
SOX2P48431 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SOX2P48431 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC14.82□□□□□ -0.04
SOX2P48431 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SOX2P48431 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
SOX2P48431 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC14.82□□□□□ -0.04
SOX2P48431 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SOX2P48431 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
SOX2P48431 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC14.82□□□□□ -0.04
SOX2P48431 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SOX2P48431 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SOX2P48431 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
SOX2P48431 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC14.82□□□□□ -0.04
SOX2P48431 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
SOX2P48431 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
SOX2P48431 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
SOX2P48431 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
SOX2P48431 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
SOX2P48431 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SOX2P48431 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SOX2P48431 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
SOX2P48431 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC14.82□□□□□ -0.04
SOX2P48431 DANCR-204ENST00000444958 709 ntTSL 3 BASIC14.82□□□□□ -0.04
SOX2P48431 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC14.82□□□□□ -0.04
SOX2P48431 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC14.82□□□□□ -0.04
SOX2P48431 AC022616.7-201ENST00000525383 220 ntBASIC14.82□□□□□ -0.04
SOX2P48431 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC14.82□□□□□ -0.04
SOX2P48431 KRT8P26-201ENST00000534154 1276 ntBASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms