Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
SOX3P41225 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SOX3P41225 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC15.85■□□□□ 0.13
SOX3P41225 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SOX3P41225 CRCP-205ENST00000431089 942 ntTSL 2 BASIC15.85■□□□□ 0.13
SOX3P41225 AL591424.1-201ENST00000442569 1213 ntBASIC15.85■□□□□ 0.13
SOX3P41225 HS6ST1P1-201ENST00000481504 1234 ntBASIC15.85■□□□□ 0.13
SOX3P41225 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC15.85■□□□□ 0.13
SOX3P41225 FAM197Y3-203ENST00000618346 717 ntBASIC15.85■□□□□ 0.13
SOX3P41225 AC004790.2-201ENST00000623588 572 ntBASIC15.85■□□□□ 0.13
SOX3P41225 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SOX3P41225 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SOX3P41225 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SOX3P41225 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SOX3P41225 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
SOX3P41225 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SOX3P41225 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SOX3P41225 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC15.85■□□□□ 0.13
SOX3P41225 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SOX3P41225 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
SOX3P41225 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SOX3P41225 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SOX3P41225 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SOX3P41225 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
SOX3P41225 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
SOX3P41225 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC15.84■□□□□ 0.13
SOX3P41225 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
SOX3P41225 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SOX3P41225 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SOX3P41225 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
SOX3P41225 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SOX3P41225 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC15.84■□□□□ 0.13
SOX3P41225 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
SOX3P41225 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
SOX3P41225 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SOX3P41225 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SOX3P41225 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
SOX3P41225 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC15.84■□□□□ 0.13
SOX3P41225 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC15.84■□□□□ 0.13
SOX3P41225 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SOX3P41225 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
SOX3P41225 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SOX3P41225 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC15.84■□□□□ 0.13
SOX3P41225 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
SOX3P41225 METTL26-205ENST00000397666 726 ntTSL 2 BASIC15.84■□□□□ 0.13
SOX3P41225 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC15.84■□□□□ 0.13
SOX3P41225 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC15.84■□□□□ 0.13
SOX3P41225 KRT18P3-201ENST00000451602 1288 ntBASIC15.84■□□□□ 0.13
SOX3P41225 TCAP-202ENST00000578283 583 ntTSL 5 BASIC15.84■□□□□ 0.13
SOX3P41225 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC15.84■□□□□ 0.13
SOX3P41225 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC15.84■□□□□ 0.13
SOX3P41225 PI4KAP1-204ENST00000612579 1703 ntBASIC15.84■□□□□ 0.13
SOX3P41225 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC15.84■□□□□ 0.13
SOX3P41225 PMS2P7-201ENST00000506558 1336 ntBASIC15.84■□□□□ 0.13
SOX3P41225 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC15.84■□□□□ 0.13
SOX3P41225 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SOX3P41225 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC15.84■□□□□ 0.13
SOX3P41225 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SOX3P41225 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SOX3P41225 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SOX3P41225 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
SOX3P41225 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC15.84■□□□□ 0.13
SOX3P41225 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SOX3P41225 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SOX3P41225 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC15.84■□□□□ 0.13
SOX3P41225 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
SOX3P41225 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC15.83■□□□□ 0.13
SOX3P41225 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
SOX3P41225 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.13
SOX3P41225 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
SOX3P41225 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
SOX3P41225 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC15.83■□□□□ 0.13
SOX3P41225 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC15.83■□□□□ 0.13
SOX3P41225 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.13
SOX3P41225 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
SOX3P41225 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC15.83■□□□□ 0.13
SOX3P41225 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC15.83■□□□□ 0.13
SOX3P41225 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
SOX3P41225 ABR-203ENST00000536794 2213 ntTSL 2 BASIC15.83■□□□□ 0.13
SOX3P41225 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
SOX3P41225 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC15.83■□□□□ 0.12
SOX3P41225 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC15.83■□□□□ 0.12
SOX3P41225 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SOX3P41225 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC15.83■□□□□ 0.12
SOX3P41225 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC15.83■□□□□ 0.12
SOX3P41225 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
SOX3P41225 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SOX3P41225 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SOX3P41225 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SOX3P41225 FABP5-202ENST00000396359 986 ntTSL 5 BASIC15.83■□□□□ 0.12
SOX3P41225 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC15.83■□□□□ 0.12
SOX3P41225 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SOX3P41225 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC15.83■□□□□ 0.12
SOX3P41225 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC15.83■□□□□ 0.12
SOX3P41225 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC15.83■□□□□ 0.12
SOX3P41225 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC15.83■□□□□ 0.12
SOX3P41225 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC15.83■□□□□ 0.12
SOX3P41225 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC15.83■□□□□ 0.12
SOX3P41225 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC15.83■□□□□ 0.12
SOX3P41225 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC15.83■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms