Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC13□□□□□ -0.33
HOXD3P31249 AC004835.2-201ENST00000603762 682 ntBASIC13□□□□□ -0.33
HOXD3P31249 AC068137.2-201ENST00000605408 478 ntBASIC13□□□□□ -0.33
HOXD3P31249 AC093512.1-201ENST00000617969 520 ntBASIC13□□□□□ -0.33
HOXD3P31249 REXO1L3P-201ENST00000622202 1288 ntBASIC13□□□□□ -0.33
HOXD3P31249 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC13□□□□□ -0.33
HOXD3P31249 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HOXD3P31249 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
HOXD3P31249 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
HOXD3P31249 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC13□□□□□ -0.33
HOXD3P31249 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HOXD3P31249 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
HOXD3P31249 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HOXD3P31249 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC13□□□□□ -0.33
HOXD3P31249 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
HOXD3P31249 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HOXD3P31249 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HOXD3P31249 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC13□□□□□ -0.33
HOXD3P31249 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
HOXD3P31249 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HOXD3P31249 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HOXD3P31249 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXD3P31249 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC12.99□□□□□ -0.33
HOXD3P31249 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC12.99□□□□□ -0.33
HOXD3P31249 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXD3P31249 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
HOXD3P31249 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC12.99□□□□□ -0.33
HOXD3P31249 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXD3P31249 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
HOXD3P31249 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
HOXD3P31249 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXD3P31249 GOLGA6L17P-202ENST00000614358 1398 ntBASIC12.99□□□□□ -0.33
HOXD3P31249 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXD3P31249 TUBB8P12-201ENST00000308911 1335 ntBASIC12.99□□□□□ -0.33
HOXD3P31249 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXD3P31249 TUBB7P-202ENST00000428444 1305 ntBASIC12.99□□□□□ -0.33
HOXD3P31249 TUBB8P7-204ENST00000567960 1332 ntBASIC12.99□□□□□ -0.33
HOXD3P31249 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXD3P31249 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC12.99□□□□□ -0.33
HOXD3P31249 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXD3P31249 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXD3P31249 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
HOXD3P31249 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXD3P31249 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HOXD3P31249 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC12.99□□□□□ -0.33
HOXD3P31249 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC12.99□□□□□ -0.33
HOXD3P31249 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC12.99□□□□□ -0.33
HOXD3P31249 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC12.99□□□□□ -0.33
HOXD3P31249 AC005412.3-201ENST00000580309 715 ntBASIC12.99□□□□□ -0.33
HOXD3P31249 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC12.99□□□□□ -0.33
HOXD3P31249 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC12.99□□□□□ -0.33
HOXD3P31249 METTL23-205ENST00000588302 925 ntTSL 5 BASIC12.99□□□□□ -0.33
HOXD3P31249 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC12.99□□□□□ -0.33
HOXD3P31249 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC12.99□□□□□ -0.33
HOXD3P31249 BSG-214ENST00000614867 960 ntTSL 3 BASIC12.99□□□□□ -0.33
HOXD3P31249 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC12.99□□□□□ -0.33
HOXD3P31249 CITED2-204ENST00000618718 901 ntTSL 2 BASIC12.99□□□□□ -0.33
HOXD3P31249 AC092902.6-201ENST00000641783 218 ntBASIC12.99□□□□□ -0.33
HOXD3P31249 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXD3P31249 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC12.99□□□□□ -0.33
HOXD3P31249 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
HOXD3P31249 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HOXD3P31249 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC12.99□□□□□ -0.33
HOXD3P31249 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC12.99□□□□□ -0.33
HOXD3P31249 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXD3P31249 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC12.99□□□□□ -0.33
HOXD3P31249 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXD3P31249 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXD3P31249 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
HOXD3P31249 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
HOXD3P31249 AC092919.2-201ENST00000623631 1645 ntBASIC12.99□□□□□ -0.33
HOXD3P31249 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC12.98□□□□□ -0.33
HOXD3P31249 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXD3P31249 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC12.98□□□□□ -0.33
HOXD3P31249 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC12.98□□□□□ -0.33
HOXD3P31249 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXD3P31249 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXD3P31249 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC12.98□□□□□ -0.33
HOXD3P31249 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
HOXD3P31249 AC092068.3-201ENST00000587894 2016 ntBASIC12.98□□□□□ -0.33
HOXD3P31249 KRT8P49-201ENST00000604166 1432 ntBASIC12.98□□□□□ -0.33
HOXD3P31249 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
HOXD3P31249 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXD3P31249 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HOXD3P31249 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HOXD3P31249 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC12.98□□□□□ -0.33
HOXD3P31249 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC12.98□□□□□ -0.33
HOXD3P31249 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HOXD3P31249 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HOXD3P31249 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HOXD3P31249 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HOXD3P31249 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXD3P31249 AC004461.1-201ENST00000412461 403 ntBASIC12.98□□□□□ -0.33
HOXD3P31249 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC12.98□□□□□ -0.33
HOXD3P31249 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC12.98□□□□□ -0.33
HOXD3P31249 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HOXD3P31249 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC12.98□□□□□ -0.33
HOXD3P31249 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
HOXD3P31249 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC12.98□□□□□ -0.33
HOXD3P31249 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC12.98□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms