Protein–RNA interactions for Protein: P04004

VTN, Vitronectin, humanhuman

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTNP04004 KRT18P34-201ENST00000488218 1270 ntBASIC18.33■□□□□ 0.52
VTNP04004 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC18.33■□□□□ 0.52
VTNP04004 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC18.33■□□□□ 0.52
VTNP04004 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC18.33■□□□□ 0.52
VTNP04004 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC18.33■□□□□ 0.52
VTNP04004 DUT-210ENST00000559935 569 ntTSL 3 BASIC18.33■□□□□ 0.52
VTNP04004 AC092364.2-202ENST00000597012 1073 ntBASIC18.33■□□□□ 0.52
VTNP04004 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
VTNP04004 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
VTNP04004 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
VTNP04004 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VTNP04004 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC18.33■□□□□ 0.52
VTNP04004 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VTNP04004 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC18.33■□□□□ 0.52
VTNP04004 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
VTNP04004 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
VTNP04004 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
VTNP04004 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
VTNP04004 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VTNP04004 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VTNP04004 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
VTNP04004 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VTNP04004 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
VTNP04004 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
VTNP04004 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
VTNP04004 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
VTNP04004 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VTNP04004 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VTNP04004 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VTNP04004 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VTNP04004 KLF2P3-201ENST00000451977 1087 ntBASIC18.32■□□□□ 0.52
VTNP04004 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC18.32■□□□□ 0.52
VTNP04004 AC125807.1-201ENST00000483097 614 ntBASIC18.32■□□□□ 0.52
VTNP04004 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC18.32■□□□□ 0.52
VTNP04004 MIR6080-201ENST00000617359 66 ntBASIC18.32■□□□□ 0.52
VTNP04004 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC18.32■□□□□ 0.52
VTNP04004 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VTNP04004 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
VTNP04004 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VTNP04004 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC18.32■□□□□ 0.52
VTNP04004 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC18.31■□□□□ 0.52
VTNP04004 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VTNP04004 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
VTNP04004 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VTNP04004 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VTNP04004 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
VTNP04004 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VTNP04004 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC18.31■□□□□ 0.52
VTNP04004 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.31■□□□□ 0.52
VTNP04004 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
VTNP04004 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VTNP04004 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.31■□□□□ 0.52
VTNP04004 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
VTNP04004 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC18.31■□□□□ 0.52
VTNP04004 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
VTNP04004 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VTNP04004 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
VTNP04004 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VTNP04004 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VTNP04004 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VTNP04004 MIR943-201ENST00000401286 94 ntBASIC18.31■□□□□ 0.52
VTNP04004 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VTNP04004 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC18.31■□□□□ 0.52
VTNP04004 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC18.31■□□□□ 0.52
VTNP04004 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VTNP04004 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC18.31■□□□□ 0.52
VTNP04004 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC18.31■□□□□ 0.52
VTNP04004 AC093214.1-201ENST00000511688 1107 ntBASIC18.31■□□□□ 0.52
VTNP04004 MIR3197-201ENST00000582241 73 ntBASIC18.31■□□□□ 0.52
VTNP04004 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VTNP04004 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC18.31■□□□□ 0.52
VTNP04004 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VTNP04004 AL096865.1-201ENST00000606796 927 ntBASIC18.31■□□□□ 0.52
VTNP04004 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
VTNP04004 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VTNP04004 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
VTNP04004 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VTNP04004 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VTNP04004 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
VTNP04004 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VTNP04004 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VTNP04004 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VTNP04004 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VTNP04004 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
VTNP04004 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC18.31■□□□□ 0.52
VTNP04004 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VTNP04004 AL645728.1-201ENST00000366221 2101 ntBASIC18.31■□□□□ 0.52
VTNP04004 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VTNP04004 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
VTNP04004 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VTNP04004 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VTNP04004 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
VTNP04004 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
VTNP04004 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VTNP04004 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
VTNP04004 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
VTNP04004 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VTNP04004 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC18.3■□□□□ 0.52
VTNP04004 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC18.3■□□□□ 0.52
VTNP04004 WRB-204ENST00000398753 699 ntTSL 3 BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms