Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
MSH4O15457 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
MSH4O15457 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSH4O15457 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC18.79■□□□□ 0.6
MSH4O15457 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC18.79■□□□□ 0.6
MSH4O15457 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
MSH4O15457 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSH4O15457 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC18.79■□□□□ 0.6
MSH4O15457 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSH4O15457 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSH4O15457 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
MSH4O15457 AKAP8P1-201ENST00000434743 1349 ntBASIC18.79■□□□□ 0.6
MSH4O15457 FLJ38576-201ENST00000623820 2459 ntBASIC18.79■□□□□ 0.6
MSH4O15457 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSH4O15457 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
MSH4O15457 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSH4O15457 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSH4O15457 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
MSH4O15457 AC254562.1-201ENST00000417586 456 ntBASIC18.79■□□□□ 0.6
MSH4O15457 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC18.79■□□□□ 0.6
MSH4O15457 TIMM8BP1-201ENST00000452384 211 ntBASIC18.79■□□□□ 0.6
MSH4O15457 FAM86C2P-203ENST00000528684 1004 ntBASIC18.79■□□□□ 0.6
MSH4O15457 CCND1-203ENST00000536559 553 ntTSL 3 BASIC18.79■□□□□ 0.6
MSH4O15457 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
MSH4O15457 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC18.79■□□□□ 0.6
MSH4O15457 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC18.79■□□□□ 0.6
MSH4O15457 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSH4O15457 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSH4O15457 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC18.79■□□□□ 0.6
MSH4O15457 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSH4O15457 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
MSH4O15457 HLA-A-202ENST00000376806 1854 ntBASIC18.79■□□□□ 0.6
MSH4O15457 UBALD1-205ENST00000590891 2641 ntBASIC18.79■□□□□ 0.6
MSH4O15457 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.79■□□□□ 0.6
MSH4O15457 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSH4O15457 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC18.79■□□□□ 0.6
MSH4O15457 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC18.79■□□□□ 0.6
MSH4O15457 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSH4O15457 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
MSH4O15457 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC18.78■□□□□ 0.6
MSH4O15457 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC18.78■□□□□ 0.6
MSH4O15457 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
MSH4O15457 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
MSH4O15457 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSH4O15457 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSH4O15457 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
MSH4O15457 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC18.78■□□□□ 0.6
MSH4O15457 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
MSH4O15457 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC18.78■□□□□ 0.6
MSH4O15457 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
MSH4O15457 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSH4O15457 AC004461.1-201ENST00000412461 403 ntBASIC18.78■□□□□ 0.6
MSH4O15457 SPDYE11-202ENST00000450699 704 ntBASIC18.78■□□□□ 0.6
MSH4O15457 HLA-J-202ENST00000469281 1241 ntBASIC18.78■□□□□ 0.6
MSH4O15457 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
MSH4O15457 SPDYE9P-201ENST00000570642 692 ntBASIC18.78■□□□□ 0.6
MSH4O15457 SPDYE10P-202ENST00000612005 668 ntBASIC18.78■□□□□ 0.6
MSH4O15457 SPDYE8P-202ENST00000612377 668 ntBASIC18.78■□□□□ 0.6
MSH4O15457 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC18.78■□□□□ 0.6
MSH4O15457 AC011676.5-201ENST00000624864 2660 ntBASIC18.78■□□□□ 0.6
MSH4O15457 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSH4O15457 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSH4O15457 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
MSH4O15457 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC18.78■□□□□ 0.6
MSH4O15457 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSH4O15457 AL031731.1-201ENST00000642131 2094 ntBASIC18.78■□□□□ 0.6
MSH4O15457 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
MSH4O15457 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC18.78■□□□□ 0.6
MSH4O15457 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC18.78■□□□□ 0.6
MSH4O15457 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSH4O15457 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSH4O15457 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSH4O15457 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MSH4O15457 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC18.77■□□□□ 0.6
MSH4O15457 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MSH4O15457 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC18.77■□□□□ 0.6
MSH4O15457 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
MSH4O15457 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC18.77■□□□□ 0.6
MSH4O15457 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
MSH4O15457 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MSH4O15457 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.6
MSH4O15457 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
MSH4O15457 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MSH4O15457 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
MSH4O15457 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
MSH4O15457 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC18.77■□□□□ 0.6
MSH4O15457 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC18.77■□□□□ 0.6
MSH4O15457 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC18.77■□□□□ 0.6
MSH4O15457 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
MSH4O15457 AC079140.1-201ENST00000508039 487 ntBASIC18.77■□□□□ 0.6
MSH4O15457 GATB-205ENST00000508611 605 ntTSL 2 BASIC18.77■□□□□ 0.6
MSH4O15457 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC18.77■□□□□ 0.6
MSH4O15457 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC18.77■□□□□ 0.6
MSH4O15457 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
MSH4O15457 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC18.77■□□□□ 0.6
MSH4O15457 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
MSH4O15457 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
MSH4O15457 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MSH4O15457 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MSH4O15457 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms