Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PCDHGA3Q9Y5H0 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCDHGA3Q9Y5H0 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.42■□□□□ 0.22
PCDHGA3Q9Y5H0 PI4KAP1-204ENST00000612579 1703 ntBASIC16.42■□□□□ 0.22
PCDHGA3Q9Y5H0 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCDHGA3Q9Y5H0 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.41■□□□□ 0.22
PCDHGA3Q9Y5H0 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCDHGA3Q9Y5H0 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCDHGA3Q9Y5H0 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC16.41■□□□□ 0.22
PCDHGA3Q9Y5H0 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCDHGA3Q9Y5H0 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PCDHGA3Q9Y5H0 DDT-204ENST00000404092 805 ntTSL 3 BASIC16.41■□□□□ 0.22
PCDHGA3Q9Y5H0 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC16.41■□□□□ 0.22
PCDHGA3Q9Y5H0 FAM58CP-201ENST00000435741 640 ntBASIC16.41■□□□□ 0.22
PCDHGA3Q9Y5H0 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PCDHGA3Q9Y5H0 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCDHGA3Q9Y5H0 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PCDHGA3Q9Y5H0 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC16.41■□□□□ 0.22
PCDHGA3Q9Y5H0 CXCL1P1-201ENST00000502804 216 ntBASIC16.41■□□□□ 0.22
PCDHGA3Q9Y5H0 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC16.41■□□□□ 0.22
PCDHGA3Q9Y5H0 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC16.41■□□□□ 0.22
PCDHGA3Q9Y5H0 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC16.41■□□□□ 0.22
PCDHGA3Q9Y5H0 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC16.41■□□□□ 0.22
PCDHGA3Q9Y5H0 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC16.41■□□□□ 0.22
PCDHGA3Q9Y5H0 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PCDHGA3Q9Y5H0 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC16.41■□□□□ 0.22
PCDHGA3Q9Y5H0 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.41■□□□□ 0.22
PCDHGA3Q9Y5H0 PCDH8P1-201ENST00000428983 2773 ntBASIC16.41■□□□□ 0.22
PCDHGA3Q9Y5H0 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCDHGA3Q9Y5H0 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.41■□□□□ 0.22
PCDHGA3Q9Y5H0 AL590787.1-201ENST00000568856 1315 ntBASIC16.41■□□□□ 0.22
PCDHGA3Q9Y5H0 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.41■□□□□ 0.22
PCDHGA3Q9Y5H0 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
PCDHGA3Q9Y5H0 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCDHGA3Q9Y5H0 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PCDHGA3Q9Y5H0 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
PCDHGA3Q9Y5H0 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 KRT18P55-202ENST00000578578 1546 ntBASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 LINC00554-201ENST00000564841 3011 ntBASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 ENSA-206ENST00000361631 725 ntTSL 2 BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 NEK7-201ENST00000367383 586 ntTSL 2 BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 PNMT-202ENST00000394246 821 ntTSL 2 BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA3Q9Y5H0 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
PCDHGA3Q9Y5H0 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
PCDHGA3Q9Y5H0 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.22
PCDHGA3Q9Y5H0 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
PCDHGA3Q9Y5H0 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCDHGA3Q9Y5H0 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PCDHGA3Q9Y5H0 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
PCDHGA3Q9Y5H0 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCDHGA3Q9Y5H0 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
PCDHGA3Q9Y5H0 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCDHGA3Q9Y5H0 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PCDHGA3Q9Y5H0 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.39■□□□□ 0.21
PCDHGA3Q9Y5H0 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PCDHGA3Q9Y5H0 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCDHGA3Q9Y5H0 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PCDHGA3Q9Y5H0 FAM185BP-201ENST00000443595 716 ntBASIC16.39■□□□□ 0.21
PCDHGA3Q9Y5H0 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
PCDHGA3Q9Y5H0 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC16.39■□□□□ 0.21
PCDHGA3Q9Y5H0 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
PCDHGA3Q9Y5H0 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC16.39■□□□□ 0.21
PCDHGA3Q9Y5H0 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC16.39■□□□□ 0.21
PCDHGA3Q9Y5H0 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
PCDHGA3Q9Y5H0 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
PCDHGA3Q9Y5H0 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCDHGA3Q9Y5H0 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PCDHGA3Q9Y5H0 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.39■□□□□ 0.21
PCDHGA3Q9Y5H0 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 69.9 ms