Protein–RNA interactions for Protein: Q9Y5F2

PCDHB11, Protocadherin beta-11, humanhuman

Predictions only

Length 797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB11Q9Y5F2 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHB11Q9Y5F2 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHB11Q9Y5F2 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHB11Q9Y5F2 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
PCDHB11Q9Y5F2 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHB11Q9Y5F2 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.49■□□□□ 0.23
PCDHB11Q9Y5F2 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHB11Q9Y5F2 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 SERPINA7P1-201ENST00000443077 631 ntBASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 ACTG1P14-201ENST00000446382 1122 ntBASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 AC096734.2-201ENST00000562054 433 ntBASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 AC007064.4-201ENST00000637740 555 ntBASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 AL118508.1-201ENST00000613502 2345 ntBASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 AGGF1P2-201ENST00000426656 2106 ntBASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.48■□□□□ 0.23
PCDHB11Q9Y5F2 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 BCAR1-209ENST00000546196 1340 ntBASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 AC092053.1-201ENST00000605787 1936 ntBASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 SYS1-203ENST00000414310 795 ntTSL 3 BASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 STK33P1-201ENST00000423835 1218 ntBASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 PDPK2P-202ENST00000562415 1191 ntBASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 AC106028.4-201ENST00000614509 607 ntBASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 AC004877.2-201ENST00000623941 599 ntBASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.47■□□□□ 0.23
PCDHB11Q9Y5F2 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PCDHB11Q9Y5F2 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PCDHB11Q9Y5F2 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PCDHB11Q9Y5F2 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
PCDHB11Q9Y5F2 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PCDHB11Q9Y5F2 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PCDHB11Q9Y5F2 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
PCDHB11Q9Y5F2 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PCDHB11Q9Y5F2 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
PCDHB11Q9Y5F2 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PCDHB11Q9Y5F2 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PCDHB11Q9Y5F2 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PCDHB11Q9Y5F2 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
PCDHB11Q9Y5F2 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.46■□□□□ 0.23
PCDHB11Q9Y5F2 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
PCDHB11Q9Y5F2 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
PCDHB11Q9Y5F2 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms